Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_G19
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.30
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.39
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 6.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.30
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 287 PPXPPPKXXXXPPPPPPXGGXXXXXPP 367
P PP PPPPPP G PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 30.3 bits (65), Expect = 0.39
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 290 PXPPPKXXXXPPPPPPXGGXXXXXPP 367
P P P PPPPPP G PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 266 PPXFFFXPPXPPPKXXXXPPPPPPXGGXXXXXPP 367
PP P P P PPP P GG PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 287 PPXPPPKXXXXPPPPPP 337
PP PPP PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 287 PPXPPPKXXXXPPPPPP 337
PP PP PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 287 PPXPPPKXXXXPPPPPPXGGXXXXXPP 367
PP P PPPPPP PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 748 GGPXPLRXPPXPXFVVXSGFXPXPPP 825
GGP P PP P V +G P PPP
Sbjct: 759 GGPPP---PPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 287 PPXPPPKXXXXPPPPPPXGGXXXXXPP 367
PP P PPPPP G PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.39
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = +2
Query: 287 PPXPPP--KXXXXPPPPPPXG 343
PP PPP + PPPPPP G
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPG 31
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Frame = +2
Query: 287 PPXPPPKXXXXP--PPPPPXGG 346
PP PPP P PPPPP G
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPG 31
Score = 25.8 bits (54), Expect(2) = 0.71
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 319 PPPPPPPXG 345
PPPPPPP G
Sbjct: 9 PPPPPPPPG 17
Score = 21.8 bits (44), Expect(2) = 0.71
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 295 SPPKKXXXPPPPPP 336
S P PPPPPP
Sbjct: 3 SLPPGNPPPPPPPP 16
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 266 PPXFFFXPPXPPPKXXXXPPPPPPXGGXXXXXPP 367
PP P PPP PP PP PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 268 PPXFFXXPXSPPKKXXXPPPPPPP 339
PP S P PPPPPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPP 196
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 336 GGGGGGXXXFFGGGXGGXKKXXGG 265
GG GGG GGG GG + GG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGG 49
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +2
Query: 290 PXPPPKXXXXPPPPPPXGGXXXXXPP 367
P P P PPPPP PP
Sbjct: 734 PAPTPAVKHHPPPPPVRSSISPSMPP 759
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 287 PPXPPPKXXXXPPPPPPXGGXXXXXPP 367
PP PPP PP P P G PP
Sbjct: 1189 PPVPPPSEA--PPVPKPSVGVPPVPPP 1213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,262
Number of Sequences: 5004
Number of extensions: 19255
Number of successful extensions: 247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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