Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_G17
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       24   3.6  
08_02_0028 - 11371547-11371657,11372326-11372518,11372738-113728...    29   5.6  
07_01_0973 - 8193002-8193261,8193388-8193485,8194117-8194401,819...    28   9.7  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 24.2 bits (50), Expect(2) = 3.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 698 PPPXXXKXXXXXXXXGGFPPPPP 630
           PPP   K         G PPPPP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPP 349



 Score = 23.4 bits (48), Expect(2) = 3.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 653 GGFPPPPPK 627
           GG PPPPPK
Sbjct: 375 GGPPPPPPK 383


>08_02_0028 -
           11371547-11371657,11372326-11372518,11372738-11372814,
           11373498-11373608,11374533-11374659,11374745-11375022
          Length = 298

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 127 CWDPSGHGRRPSLRR*AGRSHRCQIKTPVTKLKSTRLLPMS 249
           CW P+    RP+  R      RC ++T   +L+S R+  +S
Sbjct: 245 CWSPNSRLFRPTEERDRKIPTRCSLETEYFQLESIRIYDLS 285


>07_01_0973 -
           8193002-8193261,8193388-8193485,8194117-8194401,
           8195559-8195773,8196549-8197058
          Length = 455

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 102 IFSCLLFVLLGSVWARTATKPQEISGPITSLSDKNARDKAKVHPAF 239
           +F    + L  SVW+      Q+++  +   +D   RD+   HP F
Sbjct: 398 VFGLAPYKLRSSVWSSNGPHEQQLAASLMQAADDWLRDRQVHHPDF 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,388
Number of Sequences: 37544
Number of extensions: 296045
Number of successful extensions: 695
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)