Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_G16
         (952 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.76 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 747 GGVXGGXXGGGXFLGXFXGGGG 682
           GGV  G  GG   +G   GGGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGG 49


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +2

Query: 626 APPPXQXXKXAXXXVXXXXPPPPXKXPKXFPPPXXPPXTPP 748
           AP P      +        PP P + P    PP  PP   P
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 634 PLTTXKXGXGAGXXXXPPPPXKXXQKXPPPXXXP 735
           P+TT + G        PP P K  +K P     P
Sbjct: 622 PVTTKRDGTQETEERLPPLPPKRIRKMPSMPLLP 655


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,749
Number of Sequences: 438
Number of extensions: 6209
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)