Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_G15
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 237 1e-63
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 229 4e-61
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 116 3e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 97 2e-21
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 27 2.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 7.8
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 237 bits (580), Expect = 1e-63
Identities = 114/211 (54%), Positives = 139/211 (65%)
Frame = +1
Query: 220 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 399
CLEHGIQP+G M + D F+TFFSETG GK+VPR+++VDLEP V+D+VRTG YR
Sbjct: 25 CLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYR 84
Query: 400 QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXX 579
LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+IR++AD C+GLQGFL+FH
Sbjct: 85 DLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGG 144
Query: 580 XXXXXXXLLMERLSG*LRQEV*TGVRHLPRASGFHCRRRAYNSIXXXXXXXXXXXXXSWX 759
LL+ERL+ ++ P YNS+
Sbjct: 145 TGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMV 204
Query: 760 DNEAIYDICRRNLDIERPTYTNLNRLIGQIV 852
DNE+ YDICRRNLDIERP+Y NLNRLI Q+V
Sbjct: 205 DNESCYDICRRNLDIERPSYENLNRLIAQVV 235
Score = 52.0 bits (119), Expect = 1e-07
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 147 MRECISVHVGQAGVQIGNACWELY 218
MRE IS+HVGQAG QIGNACWELY
Sbjct: 1 MREIISIHVGQAGTQIGNACWELY 24
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 229 bits (560), Expect = 4e-61
Identities = 115/216 (53%), Positives = 140/216 (64%), Gaps = 5/216 (2%)
Frame = +1
Query: 220 CLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVR 384
CLEHGI PDG PT+ K +D F TFFSETG GK VPR+++VDLEP V+D+VR
Sbjct: 25 CLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVR 83
Query: 385 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 564
TG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+RIR++AD C+GLQGFL+FH
Sbjct: 84 TGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFH 143
Query: 565 XXXXXXXXXXXXLLMERLSG*LRQEV*TGVRHLPRASGFHCRRRAYNSIXXXXXXXXXXX 744
LL+ERL+ ++ P YNS+
Sbjct: 144 SFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSD 203
Query: 745 XXSWXDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 852
DNEA YDICRRNLDIERPTY NLNRLI Q+V
Sbjct: 204 CTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVV 239
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/44 (61%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 MRECISVHVGQAGVQIGNACWELY-LPGARHPA*WPDAHRQDHR 275
MRE ISVHVGQAGVQIGNACWELY L P +P + + H+
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHK 44
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 116 bits (280), Expect = 3e-27
Identities = 66/209 (31%), Positives = 97/209 (46%)
Frame = +1
Query: 226 EHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 405
EHG+ G T + N +F+E GK+VPRAV VDLEP +D V++G + L
Sbjct: 27 EHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNL 84
Query: 406 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 585
F P+ +I G+ A N +A+GHYT G E+ D VLD +R+ A+ C LQGF + H
Sbjct: 85 FRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTG 144
Query: 586 XXXXXLLMERLSG*LRQEV*TGVRHLPRASGFHCRRRAYNSIXXXXXXXXXXXXXSWXDN 765
LL+ ++ + P YN+ DN
Sbjct: 145 SGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDN 204
Query: 766 EAIYDICRRNLDIERPTYTNLNRLIGQIV 852
EA+ I L I+ P+Y +LN L+ ++
Sbjct: 205 EALSSIFANTLKIKSPSYDDLNHLVSAVM 233
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 147 MRECISVHVGQAGVQIGNACW 209
MRE + + GQ G Q+G A W
Sbjct: 1 MREIVHIQAGQCGNQVGAAFW 21
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 97.5 bits (232), Expect = 2e-21
Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 3/214 (1%)
Frame = +1
Query: 220 CLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYR 399
CLEHGI PDG + + T G D + FF ++ +++PRA+ +DLEP VV+ + + TY
Sbjct: 26 CLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYG 83
Query: 400 QLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXX 573
L++PE ++ K A NN+A G Y+ + I + ++D I + AD L+GF + H
Sbjct: 84 SLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIA 142
Query: 574 XXXXXXXXXLLMERLSG*LRQEV*TGVRHLPRA-SGFHCRRRAYNSIXXXXXXXXXXXXX 750
L+ERL+ +++ P + S + YNS+
Sbjct: 143 GGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSV 202
Query: 751 SWXDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 852
DN A+ I L + PT+ N+L+ ++
Sbjct: 203 VVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVM 236
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 687 PSSSLQLYPHHPHNLEHSDCAFMXR 761
PS+S+Q+ P H HN++++ + R
Sbjct: 178 PSNSVQVKPKHEHNVDYNSSMYRRR 202
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 218 LAWSTASSLMARCPQTRPSGVETILSTLSSARPELAST 331
L ST SSL + ++PS T ST SSA P S+
Sbjct: 170 LTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 246 WPDAHRQDHRGWRRFFQHFLQR 311
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,492,984
Number of Sequences: 5004
Number of extensions: 74268
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -