Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_G10
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    89   6e-19
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    29   1.2  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    28   2.1  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   2.1  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   3.7  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   3.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   4.9  

>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 89.4 bits (212), Expect = 6e-19
 Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
 Frame = +1

Query: 325 LVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTT---KKVESIELDIKNYSALAQWC 495
           L+IG GGREH + WKL +SP + K+Y APG+ G ++     K+E++ + + ++  L ++ 
Sbjct: 7   LLIGNGGREHTIAWKLCESPLISKVYVAPGNGGTASNGAESKMENVNIGVCDFEQLVKFA 66

Query: 496 KDNIIDLVVIGPEDPLAHGIVDGLVSYGIPCFGPNKSWCTNRGQQGLGKE 645
            D  ++LV+ GPE PL  GI       GIPCFGP+       G +   K+
Sbjct: 67  LDKDVNLVIPGPELPLVEGIEGHFRRVGIPCFGPSALAARMEGSKVFSKD 116


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = +1

Query: 442 VESIELDIKNYSALAQWCKDNIIDLVVIGPEDPLAHGIVDGLVSYGIPCFGPNKSWCTNR 621
           VE ++++ +N S ++ + +D   D   +  E     G V GL+ Y      P  ++    
Sbjct: 659 VEYVDVNEENDSLISVYERDITPDTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAM 718

Query: 622 GQQGLGKEVYEQISDTD 672
           G+Q +G   Y Q+   D
Sbjct: 719 GKQAIGAIAYNQLQRID 735


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 262 KIGKVFFNLV*FLNKMSEANVLVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTTK 438
           K G V   +V   NK+    +++ GG     A+ + ++  P V KI+  PG+  ++  K
Sbjct: 167 KDGTVAPEIVYIANKIGAEAIILAGGAQAIAAMAYGISGVPKVNKIF-GPGNQFVTAAK 224


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 643  EVYEQISDTDLPDISPSLML 702
            E YEQISDT++P I  ++ML
Sbjct: 1022 ENYEQISDTNIPVIETNVML 1041


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 637 GKEVYEQISDTDLPDISPSLM 699
           GKE+Y+++ D   PDI   LM
Sbjct: 435 GKEIYDRLRDPPAPDIHEKLM 455


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 293 YTKLKKTFPIFNRFFTCSLFKIIVSYNGKGLLFIY 189
           + + +   P+ + +F CSLFK I+  N   + F++
Sbjct: 513 FVRNQSGIPVRSIYFACSLFKEIIEANTNRVKFVH 547


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 360  KSVFPTTSAY-YQNVRFRHFI*KLHQIKENFSNF 262
            K V  +T AY Y N  +     +LHQ+K++F+ F
Sbjct: 1244 KKVLDSTEAYDYDNYYYEKKGNELHQLKDSFNGF 1277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,121
Number of Sequences: 5004
Number of extensions: 68719
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)