Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_G10
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0608 - 5013076-5013489,5014698-5015228,5015632-5016005,501... 102 5e-22
08_01_0607 + 5335542-5335806,5335998-5336371,5336854-5337384,533... 94 1e-19
02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323... 30 2.9
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606 29 5.1
02_01_0592 - 4390493-4390702,4391581-4391748,4392496-4392660,439... 29 5.1
08_02_0440 + 17192122-17192691,17193947-17194912 29 6.7
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 29 6.7
02_01_0729 - 5465521-5466005,5466481-5466793,5466878-5467094,546... 28 8.9
>12_01_0608 -
5013076-5013489,5014698-5015228,5015632-5016005,
5016389-5016637,5016942-5017047
Length = 557
Score = 102 bits (244), Expect = 5e-22
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Frame = +1
Query: 301 NKMSE--ANVLVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTTKKVESI-ELDIKN 471
+K+SE VLVIGGGGREHALC+ L SP+ ++CAPG+ GI+ + I +LDI N
Sbjct: 115 SKISEERVTVLVIGGGGREHALCYALERSPSCDAVFCAPGNSGIAQSGDATCIPDLDISN 174
Query: 472 YSALAQWCKDNIIDLVVIGPEDPLAHGIVDGLVSYGIPCFGPNKSWCTNRGQQGLGKEVY 651
A+ +C++ + LVV+GPE PL G+ + LV GIP FGP+ G + K++
Sbjct: 175 SDAVISFCRNWGVGLVVVGPEAPLVAGLANELVKAGIPTFGPSSEAAALEGSKDFMKKLC 234
Query: 652 EQ 657
++
Sbjct: 235 DK 236
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 593 GQIKAGAQIEANKDWAKRFMNKYQIPTCQ 679
G A +E +KD+ K+ +KY IPT +
Sbjct: 215 GPSSEAAALEGSKDFMKKLCDKYHIPTAK 243
>08_01_0607 +
5335542-5335806,5335998-5336371,5336854-5337384,
5338300-5338713
Length = 527
Score = 94.3 bits (224), Expect = 1e-19
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 322 VLVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTTKKVESI-ELDIKNYSALAQWCK 498
VLVIGGGGREHALC+ L SP+ + CAPG+ GI+ + I +LD+ + A+ +C
Sbjct: 94 VLVIGGGGREHALCYALNRSPSCDAVLCAPGNAGIAQSGDATCISDLDVSDSDAVIAFCC 153
Query: 499 DNIIDLVVIGPEDPLAHGIVDGLVSYGIPCFGPNKSWCTNRGQQGLGKEVYEQ 657
+ +VV+GPE PL G+V+ LV IP FGP+ G + K++ ++
Sbjct: 154 KRGVGMVVVGPEAPLVAGLVNDLVKAEIPAFGPSSEAAALEGSKDFMKKLCDK 206
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 578 EFRALGQIKAGAQIEANKDWAKRFMNKYQIPTCQ 679
E A G A +E +KD+ K+ +KY IPT +
Sbjct: 180 EIPAFGPSSEAAALEGSKDFMKKLCDKYNIPTAK 213
>02_01_0450 +
3234378-3234834,3235118-3235223,3235722-3235920,
3236119-3236187,3236299-3236373,3236484-3236582,
3236694-3236864,3237394-3237519
Length = 433
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 422 PTLPGAQ*IFFTLGESASFQQRACSRPPPPITKTFASDILFR-NYTKLKKTFPIFNRF 252
PT PGA + T+ E A+ + A PPPIT+T +L R T +K ++ RF
Sbjct: 371 PTRPGA--VQITMQELAA-KGLAAQITPPPITRTDLDKVLARQKATVSEKDLEVYTRF 425
>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
Length = 873
Score = 29.1 bits (62), Expect = 5.1
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Frame = +1
Query: 448 SIELDIKNYSALAQ----W----CKDNIIDLVVIGPEDPLAHGIVDGLVSYGIPCFGPNK 603
+IE+D+KN L + W CKDN I L V+ P L V G +PC+ N
Sbjct: 580 AIEIDLKNKKDLRRLTLNWLFSSCKDNEIVLQVLQPPTNLKCLEVAGYGGESLPCWSNNG 639
Query: 604 SWCTNRGQQGLGKEVYEQISDTD 672
S L E++S D
Sbjct: 640 SISVFPSLTDLAISSCEKLSSLD 662
>02_01_0592 -
4390493-4390702,4391581-4391748,4392496-4392660,
4393113-4393469
Length = 299
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 307 MSEANVLVIGG-GGREHALCWKLADSPNVKKIYCAPGSVGIS 429
M+ A GG GGR +AL L DS +K+Y G+V +S
Sbjct: 1 MTVAAAAASGGVGGRRYALLLALNDSEYARKVYGGYGNVFVS 42
>08_02_0440 + 17192122-17192691,17193947-17194912
Length = 511
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 436 KKVESIELDIKNYSALAQ-WCKDNIIDLVVIGPEDPLAHGIVDGLVSYGI 582
K+ E + K Y+ L WCK N D+ +D + HGI +V+Y I
Sbjct: 198 KRKYKYEPNEKMYTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNI 247
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 616 LCTSFYLAQSTEFHRKLSHLQYHEQEDLLGQSQLGLLCYLCTIALMPSS 470
L T F A+ ++ L Y E LLG ++ G+ LC+ MP+S
Sbjct: 30 LATFFDAARPQPLTSRVVTLWYRPPELLLGATEYGVAVDLCSTGCMPAS 78
>02_01_0729 -
5465521-5466005,5466481-5466793,5466878-5467094,
5467797-5468116
Length = 444
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 562 GLVSYGIPCFGPNKSWC-TNRGQQGLGKEVYE 654
G+VS I C G W + RGQ GLGK++ E
Sbjct: 131 GVVSAAIGCDGSLWVWGRSKRGQLGLGKDIVE 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,192,199
Number of Sequences: 37544
Number of extensions: 438033
Number of successful extensions: 1077
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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