Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_G10
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical pr...    85   7e-17
U41996-7|AAA83476.1|  298|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like ...    30   2.6  
U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like pr...    29   6.1  
AY323527-1|AAP78770.1|  563|Caenorhabditis elegans grainyhead tr...    28   8.0  
AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical...    28   8.0  
AC024797-1|AAF60703.3|  563|Caenorhabditis elegans Grainyhead (d...    28   8.0  

>U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical
           protein F38B6.4 protein.
          Length = 974

 Score = 85.0 bits (201), Expect = 7e-17
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
 Frame = +1

Query: 319 NVLVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTTKKVESIELDIKNYSALAQWCK 498
           NVL++G GGREHAL WK+  SP VK +  APG+ G S     E I+++  +  A+A +C+
Sbjct: 2   NVLIVGSGGREHALAWKMKQSPKVKNVIVAPGNGGHS-----ERIDINSNDLDAVADFCE 56

Query: 499 DNIIDLVVIGPEDPLAHGIVDGLVSY--GIPCFGPNK 603
            + I  V+IGPE+PL++G+ D L+     +  FGP K
Sbjct: 57  KHNIHCVLIGPEEPLSNGLADHLIRIHPNLMVFGPLK 93



 Score = 34.7 bits (76), Expect = 0.092
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +2

Query: 593 GQIKAGAQIEANKDWAKRFMNKYQIPT 673
           G +K GAQ+E +K ++K FM +Y +PT
Sbjct: 90  GPLKDGAQLETSKSFSKHFMKEYGLPT 116


>U41996-7|AAA83476.1|  298|Caenorhabditis elegans Hypothetical
           protein F38E1.10 protein.
          Length = 298

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -2

Query: 353 CSRPPPPITKTFASDILFRNYTKLKKTF--PIFNRFFTCSLFKIIVSYNGKGLLFI---Y 189
           CS+PP  IT+T        N+ + K TF  P F     C    +I S + K ++F    Y
Sbjct: 181 CSKPPQLITQTIFDKQYAFNFPQTKFTFGTPSFTYTVGCQHVSMICSSSQKAIMFFNDQY 240

Query: 188 YIQGKN 171
            I G +
Sbjct: 241 IINGND 246


>AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like
           protein-15 protein.
          Length = 587

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 425 IPTLPGAQ*IFFTLGESASFQQRACSRPPPPITK 324
           IPT+        TL  ++SF+Q    RPPPP T+
Sbjct: 90  IPTMQSTASRISTLTAASSFRQLRTGRPPPPSTQ 123


>U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like
           protein protein 15 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 425 IPTLPGAQ*IFFTLGESASFQQRACSRPPPPITK 324
           IPT+        TL  +++F+Q    RPPPP T+
Sbjct: 90  IPTMQSTASRISTLTAASTFRQLRTGRPPPPSTQ 123


>AY323527-1|AAP78770.1|  563|Caenorhabditis elegans grainyhead
           transcription factor protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 631 LVGLYLCTSFYLAQSTEFHRKLSHLQYHEQEDLLGQSQ 518
           L G Y  TS  L QS ++HR   ++ Y+ Q+ L  Q+Q
Sbjct: 43  LDGYYQQTSLQLPQSQQYHRMYENV-YNNQQILYAQTQ 79


>AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical
           protein B0511.2 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -2

Query: 398 IFFTLGESASFQQRAC-SRPPPPITKTFASDILFRNYTKLKKTFPIFNRFFTCSLFKIIV 222
           I+   G  A+   RA  +RPPPP+ K F    +F N T +     IF RFF   LF +++
Sbjct: 76  IYIPRGGKANVAARAAPARPPPPMVKNFDRINIF-NLTYML----IFLRFF---LFFLLI 127

Query: 221 SYNGKGLLFIYYIQGK 174
             N   + +I   +GK
Sbjct: 128 YANRFEIRWIKPDKGK 143


>AC024797-1|AAF60703.3|  563|Caenorhabditis elegans Grainyhead
           (drosophila transcriptionfactor) homolog protein 1
           protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 631 LVGLYLCTSFYLAQSTEFHRKLSHLQYHEQEDLLGQSQ 518
           L G Y  TS  L QS ++HR   ++ Y+ Q+ L  Q+Q
Sbjct: 43  LDGYYQQTSLQLPQSQQYHRMYENV-YNNQQILYAQTQ 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,638
Number of Sequences: 27780
Number of extensions: 383867
Number of successful extensions: 924
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)