Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_G10
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   8.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   8.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 439 KVESIELDIKNYSALAQWCKDN 504
           KV SI  D+      AQW K+N
Sbjct: 187 KVISISPDLVETDMTAQWLKEN 208


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 684 YVWQVGI*YLFINLFAQSLLASI 616
           ++W   I  +FI LF   LL+SI
Sbjct: 225 FIWAYVIPLIFIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 684 YVWQVGI*YLFINLFAQSLLASI 616
           ++W   I  +FI LF   LL+SI
Sbjct: 225 FIWAYVIPLIFIILFYSRLLSSI 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,875
Number of Sequences: 438
Number of extensions: 5002
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)