Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_G08
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.16 
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    29   0.64 
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    29   0.84 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   2.0  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   6.0  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    26   6.0  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 511 FVCDHCNGVFFNKFMLTAHFYFKHIKDQTRGIQ 609
           F+C HC+  F    +L  H   KH+K    G Q
Sbjct: 47  FICPHCSSSFTRSDVLNRHVNQKHVKQNDAGSQ 79


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
 Frame = +1

Query: 649 WFHLNNVHMVNTKTACQICLNQFQTTAKLNEHLKSHKPYL------NCTI--CGYTASRD 804
           W  L N        +C IC  QF+T A L  H+  H+  L      +C +  C  + +R 
Sbjct: 191 WSQLQNHIREAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRS 250

Query: 805 SYFTEHLXNI--GNQMF 849
           S   +H+  I  GN  F
Sbjct: 251 SALKKHISVIHEGNMAF 267



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = +1

Query: 655 HLNNVHMVNTKTACQICLNQFQTTAKLNEHL------KSHKPYLN 771
           H++ +H  N    C  C  +F     L  HL      K+HKPY+N
Sbjct: 256 HISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAHKPYIN 300


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -3

Query: 699 LACRFRVHHVHIIQMEPCVLVMHISVAYYTLYASSLIFN 583
           LA  F VH+ +   + P ++   +S  ++T++ S+++FN
Sbjct: 93  LAGMFLVHYANRALVSPLLMAPQVSPMHWTVFVSAVLFN 131


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 604  IQCVICNRYMHYKNTWFHLNNVHMVNTKTACQICLNQ 714
            I C IC R  HY     + N +    +K  C IC+ Q
Sbjct: 1368 IDCTICERRFHYDCVGLN-NEIADSVSKFTCPICMEQ 1403


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 361 GKCAIFLCKSASVSDSQHALHRSHLKTSESQLA 263
           G C ++   S    D+Q  L  ++LK SE Q++
Sbjct: 125 GSCDVYFETSQDAEDAQKTLQSTNLKGSEIQIS 157


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 720 DDSKIERALKVT*AVPELHYMRIH 791
           +D+ +ER LKV    P +H M +H
Sbjct: 170 NDTNLERILKVAKVKPAVHQMELH 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,459,534
Number of Sequences: 5004
Number of extensions: 73422
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)