Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_G07
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              31   0.010
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.28 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 24  YRXFLKLF*XXFACKPEXLPISRHIEANVGENTTITCRTEAIPSAVINWYWNGRLLQ 194
           Y  F KL+        + L ++ HI A VG+N  I C     P   + W  NG  L+
Sbjct: 297 YMAFSKLYSVSVVSLDKSLEVN-HISARVGDNVEIKCDVTGTPPPPLVWRRNGADLE 352


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 69  PEXLPISRHIEANVGENTTITCR-TEAIPSAVINWYWNGRLL 191
           P+  P +   + ++GE TT+TC  T       I+W  +GR +
Sbjct: 611 PKISPFTADRDLHLGERTTLTCSVTRGDLPLSISWLKDGRAM 652



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 281 HTGXPDSSEFYCVAENKGG 337
           H    D  E+ C+AEN+ G
Sbjct: 488 HVMVEDGGEYSCMAENRAG 506


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 281 HTGXPDSSEFYCVAENKGG 337
           H    D  E+ C+AEN+ G
Sbjct: 488 HVMVEDGGEYSCMAENRAG 506


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 111 GENTTITCRTEAIPSAVINWYWNGRLL 191
           G   T TC     P   ++W  +G+ L
Sbjct: 322 GRPATFTCNVRGNPIKTVSWLKDGKPL 348


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 111 GENTTITCRTEAIPSAVINWYWNGRLLQNGSHFNSHQKI 227
           G+ T ++ R+    +   N Y N    QN +H+ SHQ +
Sbjct: 95  GDATGLSNRSSTSSNDPKNQYKN----QNNNHYTSHQHL 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,874
Number of Sequences: 438
Number of extensions: 3855
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)