Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_G05
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 32 0.70
01_01_0401 + 3043634-3043894,3045610-3045849 31 1.6
03_05_0373 + 23581812-23583293 30 2.1
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 29 3.7
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 29 4.9
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 28 8.6
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 8.6
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 28 8.6
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 31.9 bits (69), Expect = 0.70
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -1
Query: 429 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 271
P R SA T+ WP L A+ +R L AL+CC + S PS L++C S
Sbjct: 99 PGLRASAPTLR---WPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147
>01_01_0401 + 3043634-3043894,3045610-3045849
Length = 166
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = -1
Query: 480 GGGVLLDVQGGPCGAPRPCARCSASTVP----KP---PWPCRSRLRALPWRLLAKALSCC 322
GGG + P +P A+C A VP +P P P R + L + C
Sbjct: 23 GGGGGKKLHQSPPPSPPEAAKCCADGVPVVMGEPLGAPAPPRESWNSGVLSCLGRNDEFC 82
Query: 321 STDSEPSFQALLKSC 277
S+D E SF+A K C
Sbjct: 83 SSDVEGSFEAFTKQC 97
>03_05_0373 + 23581812-23583293
Length = 493
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 462 DVQGGPCGAPRPCARCSASTVPKPPW 385
D GG A +RCSAST PK PW
Sbjct: 53 DGAGGYGSAASSPSRCSASTPPKSPW 78
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 487 EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAK 621
EKLQ + + QE+Q+L KK+SS V E +++ ++ + + A+
Sbjct: 153 EKLQKEISSLSQENQELKKKISS-VLENSDRAESEVASLKEALAQ 196
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +2
Query: 59 VFAVRFASPPHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTL 238
VF RF + P S SR+ ++V A + +R A + +K + E H L
Sbjct: 690 VFDPRFKAIP-SHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEGHTIL 748
Query: 239 EQQFNSLTKSKDAQDFSKAW 298
+ + +KD ++F + W
Sbjct: 749 IHKMQDINSNKDYKEFKRKW 768
>04_04_0285 -
24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 460 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDD 612
+EK++ ++ E+ Q+ + Q+ +K AKKVSS E+ + K + Y +
Sbjct: 516 LEKSSKSILEETQSVGHTSQQKKRKKAKKVSSVDMESLDISGEKDQCGYGE 566
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +1
Query: 463 EKNATALR-EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKA 600
EKNA L+ ++L+A ++N E ++ +VS+ +++ NE+L KI +
Sbjct: 832 EKNAALLQVQQLEANLKNLESELEQKQSQVSA-LEQANEELREKISS 877
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -1
Query: 447 PCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSC 325
PC P P R ++T + PW R R + W L C
Sbjct: 26 PCTTPAPRMRSLSATTTRRPWRTGWRGRPMRWASLVVMKLC 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,186,318
Number of Sequences: 37544
Number of extensions: 253255
Number of successful extensions: 1271
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -