Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_G04
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    32   0.57 
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    32   0.57 
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    31   1.3  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   1.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.3  
AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    30   2.3  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    29   3.1  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   3.1  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    29   3.1  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    29   4.0  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    29   4.0  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    29   4.0  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    29   4.0  
Z81516-1|CAB04203.1|  521|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protei...    28   9.3  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   9.3  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    28   9.3  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPGXGG 779
           PPPP  F  PPPPP   G
Sbjct: 105 PPPPPMFGAPPPPPPPSG 122



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 717 FFXPPP-PXFFXXPPPPPGXGG 779
           FF PPP P  F   PPPPG GG
Sbjct: 63  FFIPPPVPNGFI--PPPPGPGG 82



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 726 PPPPXFF-XXPPPPPGXGG 779
           PPPP F    PPPPP  GG
Sbjct: 85  PPPPMFAGGIPPPPPMMGG 103



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 720 FXPPPPXFFXXPPPPPGXGG 779
           F PPPP     PPPPP   G
Sbjct: 73  FIPPPPGPGGIPPPPPMFAG 92



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPGXG 776
           PPPP     PPPPP  G
Sbjct: 96  PPPPMMGGIPPPPPMFG 112


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPGXG 776
           PPPP ++  PPPPP  G
Sbjct: 97  PPPPHYYTQPPPPPQSG 113



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 727 PPPPXFFXXPPPPXGXG 777
           PPPP ++  PPPP   G
Sbjct: 97  PPPPHYYTQPPPPPQSG 113


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPGXGG 779
           PPPP     PPPPP  GG
Sbjct: 581 PPPPMLGGPPPPPPPPGG 598



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPGXGG 779
           PPPP     PPPPP   G
Sbjct: 580 PPPPPMLGGPPPPPPPPG 597


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 28/91 (30%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
 Frame = +3

Query: 255 PXVGNPFP-GKXPMPL-LXXPPXKKXXXGFXTXXXXKKXLGXXXXKKXXFPPGPXXXFKK 428
           P VG P P G  PM      PP      GF          G        FPP P      
Sbjct: 722 PGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPP-FGRGAGPMSSFPPPPRGGMHH 780

Query: 429 -------KGAPXPXXGPPTPXXKXRGGGXPP 500
                  +G      GPP P    RGGG PP
Sbjct: 781 MPPPPSFRGGRGGHGGPPPPHFDRRGGGGPP 811


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPGXGG 779
           PPPP     PPPPP  GG
Sbjct: 762 PPPPGGCPPPPPPPPPGG 779


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPGXGG 779
           PPPP     PPPPP  GG
Sbjct: 762 PPPPGGCPPPPPPPPPGG 779


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPGXGG 779
           PPPP     PPPPP  GG
Sbjct: 345 PPPPGGCPPPPPPPPPGG 362


>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 702 GXXXXFFXPPPPXFFXXPPPPPGXG 776
           G    F  PPP   F  PPPPP  G
Sbjct: 40  GPPPCFDCPPPAPIFVAPPPPPCFG 64


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPG 770
           PPPP     PPPPPG
Sbjct: 791 PPPPLGIIPPPPPPG 805


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 720 FXPPPPXFFXXPPPPPGXGG 779
           F PPPP  F  P  PP  GG
Sbjct: 352 FFPPPPPHFMRPSSPPTDGG 371


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 720 FXPPPPXFFXXPPPPPGXGG 779
           F PPPP  F  P  PP  GG
Sbjct: 352 FFPPPPPHFMRPSSPPTDGG 371


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPG 770
           PPPP     PPPPPG
Sbjct: 791 PPPPLGIIPPPPPPG 805


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 399 PPGPXXXFKKKGAPXPXXGPPTPXXKXRGGGXPP 500
           PPGP       GAP    GP  P    +GG   P
Sbjct: 187 PPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEP 220


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 399 PPGPXXXFKKKGAPXPXXGPPTPXXKXRGGGXPP 500
           PPGP       GAP    GP  P    +GG   P
Sbjct: 187 PPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEP 220


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 399 PPGPXXXFKKKGAPXPXXGPPTPXXKXRGGGXPP 500
           PPGP       GAP    GP  P    +GG   P
Sbjct: 187 PPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEP 220


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 399 PPGPXXXFKKKGAPXPXXGPPTPXXKXRGGGXPP 500
           PPGP       GAP    GP  P    +GG   P
Sbjct: 187 PPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEP 220


>Z81516-1|CAB04203.1|  521|Caenorhabditis elegans Hypothetical
           protein F26H9.2 protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 717 FFXPPPPXFFXXPPPPPG 770
           F  PPPP      PPPPG
Sbjct: 187 FTAPPPPPSLVIQPPPPG 204


>U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protein
           140, isoform a protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = +3

Query: 399 PPGPXXXFKKKGAPXPXXGPPTPXXKXRGGGXPPXXXXXXKXPPRG 536
           P GP     +KG P P  GP  P  +   GG P          PRG
Sbjct: 161 PAGPSGDNGRKGPPGPPGGPGGP-GEGGDGGRPGNPGRPGPAGPRG 205


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 720 FXPPPPXFFXXPPPPP 767
           F PPPP     PPPPP
Sbjct: 55  FCPPPPMCPPPPPPPP 70


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 726 PPPPXFFXXPPPPPGXG 776
           PPPP     PPPPP  G
Sbjct: 89  PPPPPTLKAPPPPPILG 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,899,446
Number of Sequences: 27780
Number of extensions: 219256
Number of successful extensions: 1711
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)