Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_G02
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    43   5e-05
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    30   0.48 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    29   0.64 
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.84 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    29   1.1  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    29   1.1  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      27   3.4  
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.4  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   4.5  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   5.9  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   5.9  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   5.9  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    26   7.8  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   7.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   7.8  

>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 158

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +3

Query: 276 LYKRIAKLNNPEEIKTWREERRRNYPTQANIEKK 377
           L +R   +N PEEI+ W +ER++N+PT++NI  K
Sbjct: 92  LKRRNISINTPEEIEAWIQERKKNWPTESNIRSK 125


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 366  IEKKAAMVREKIERGEKMGLSRDKNMFDNKKSGMNRKYN 482
            I K+ A +  K ++G   GL  DK++ DN  + +N  +N
Sbjct: 1197 IVKQIAQILSKQKKGASKGLPFDKSILDNHSAELNDAFN 1235


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 25/113 (22%), Positives = 40/113 (35%)
 Frame = +3

Query: 327 REERRRNYPTQANIEKKAAMVREKIERGEKMGLSRDKNMFDNKKSGMNRKYNSDNRKFNN 506
           R ERRR       + +  A  R K+   ++     ++      K  M+     D+R FN 
Sbjct: 395 RRERRRQAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVALGLSKPSMSSDTMIDSRLFNQ 454

Query: 507 KCELNRRKPIEHKFKANQKPSQTPFKKTKVLPVLDDKRSIXPFSGIQDILSES 665
              L      E  +    KP +     T   P     R +   + ++ I SES
Sbjct: 455 ASGLGSGFQDEDSYNVYDKPWRAAPSSTLYRPGATLSRQVDASAELERITSES 507


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 353 WIVSSSFFSPCLYFLGII*FSNSFVKTSRVLHLYVFGYYL 234
           W ++ S  S    ++G+  FSNS   T   +  Y F YYL
Sbjct: 116 WTLACSLVSIMNAYVGVRTFSNSLETTLTSIGFYYFSYYL 155


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = +3

Query: 138 CDRGFPNAVILEKHKNQHEKCNIDGCGF----VAHPKIITKHIQMQH 266
           C + F     L +H+  HE      C F     A   ++ +H+Q  H
Sbjct: 33  CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = -2

Query: 419 HFFTSFNFLPNHCSFFLNISLCWIVSSSF-FS-PCLYFLGII*FSNSFVKTSRVLHLYVF 246
           HF TSFN +   C    +I    ++  SF FS   L F+ +  F+  F++ S ++     
Sbjct: 271 HFETSFNIIRLACRVIADIPQITLIFISFLFSFYVLIFIWVRLFARLFLRGSTLVG---- 326

Query: 245 GYYLWMCYKSTSIYIAFFMLIFMFL 171
              +W+  +S+ +  +F+ L F++L
Sbjct: 327 --SVWVLPRSSWVLASFYSLHFLWL 349


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 318 KTWREERRRNYPTQANIEKKAAMVREKIERGEKMGLSRDKNMFDNKKSG 464
           K     RRR+    A +EK+ A  ++K ++ ++     DKN  D  + G
Sbjct: 254 KAREARRRRSAQNSAKLEKEKAKEKQK-DKDQEQDTVSDKNQIDEIEKG 301


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/64 (29%), Positives = 23/64 (35%)
 Frame = +3

Query: 561 KPSQTPFKKTKVLPVLDDKRSIXPFSGIQDILSESVTPEDIMETEKFDLGIEDDDVSEEN 740
           +P  TPF+        +D  SI PF     ILS S  P         DL  E        
Sbjct: 166 QPPYTPFRSVSTTSSSNDT-SITPFGDQTPILSSSSDPYATHRVWSMDLPFEIPFPENSE 224

Query: 741 VPXT 752
           +P T
Sbjct: 225 IPST 228


>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 282 KRIAKLNNPEEIKTWREERRRNYPTQANIEKKAAMVREKIE 404
           KRI     PEE+K  R+ER+R    Q   EKK  ++R K E
Sbjct: 18  KRIRYKLTPEEVKAERKERKRRAAIQ-RAEKK--LIRAKGE 55


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 258 MQHSTGLYKRIAKLNNPEEIKTWREERRRNY--PTQANIE 371
           +Q  T LY+   K  N EE + W E  +  Y  P   NIE
Sbjct: 222 IQRLTSLYQTRWKRINSEEKRNWEEWIKHKYKIPNDTNIE 261


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 534 IEHKFKANQKPSQTPFKKTKVLPVLDDKRSI 626
           I +KFK+ + PS+  F  T  + V D KR I
Sbjct: 5   IYYKFKSQKDPSRITFDGTIGMSVFDVKREI 35


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 108 DRNEEHWCETCDRGFPNAVILEKHK 182
           D  E  +CE C + F    + E HK
Sbjct: 238 DSTEAFYCEVCQKFFGKITVFEAHK 262


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 414 KMGLSRDKNMFDNKKSGM---NRKYNSDNRKFNNKCELNRRKPIEHKFKANQKPSQTP 578
           K  + R K  F+N K  +   N+K+    +++  KC+L    P +     ++K    P
Sbjct: 176 KANIQRQKLDFNNLKKAIELRNQKFLQGIKEYIKKCQLTELDPTQQLLTQSRKNQPVP 233


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 327 REERRRNYPTQANIEKKAAMVREKIERGEKMGLSRDKNMFDNKKSGMN 470
           +EE  R    +A  +  AA   +K +  +K    RDK +  N     N
Sbjct: 318 KEEEERRAAEEAAAKASAAAANKKAKEDKKKAQKRDKKVVKNALKDFN 365


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 57  NYGPRVSSWSNQTQSNI--DRNEEHWCETCDRGFPNAVILEKHKNQH 191
           N  P  SS + +   N    + +++ CETC R F     L++H   H
Sbjct: 46  NSKPVASSTAAKKDPNAPPQKVKQYVCETCTRAFARLEHLKRHIRSH 92


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 393  EKIERGEKMGLSRDKNMFDNKKSGMNRKYNSDN 491
            E IERGEK+GL+ D    +N  + +  K  S+N
Sbjct: 979  ELIERGEKIGLTSDN---ENMATALLLKEKSEN 1008


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,287
Number of Sequences: 5004
Number of extensions: 73904
Number of successful extensions: 301
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)