Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_G01
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    27   3.4  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    27   3.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   6.0  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    26   7.9  

>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = -3

Query: 713 IYLSYSQVE*N*YFLLNF*TMTCIQPLKKQSDYLICTIIFKSI*KTKSLTYKHFKH 546
           + + + +++ N  FL+N      I  ++   DY++   +FKS+ K++    K F+H
Sbjct: 210 VSVEFKRLKRNSIFLINSFHSKVITSIQDLEDYMV---VFKSLIKSREQKVKQFEH 262


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 611 LNNHFVSSRAEYMSWFKNLTKNISFILLDYKIN 709
           LN+HF  ++ E+M   + L K   +ILLD  IN
Sbjct: 116 LNHHF-GTKEEFMELIQELHKRDIWILLDVAIN 147


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 474 KASQLRSQNGCLSTGSFLSRFTRSASPKASIGSRIVVVLISSP 346
           K+ Q   ++ C+S+ SF++           +G +I+ VL+  P
Sbjct: 204 KSFQRNDKSMCISSSSFIAHLINQKIAHEIVGLQILAVLLERP 246


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/56 (25%), Positives = 31/56 (55%)
 Frame = -2

Query: 456 SQNGCLSTGSFLSRFTRSASPKASIGSRIVVVLISSPNLLPRASSGGAVL*IAGKP 289
           S++G L   +++S+ +++  PK +I    +V  +    +LP A +  +++  AG P
Sbjct: 426 SRDGVLPFSNWISQVSKTGQPKNAITVIYIVSALLLCTILPSAVAFTSLVSAAGAP 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,356
Number of Sequences: 5004
Number of extensions: 45208
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)