Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_F24
         (1033 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   0.63 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   6.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   8.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect(2) = 0.63
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 459 AXPPPPPP 436
           A PPPPPP
Sbjct: 730 APPPPPPP 737



 Score = 21.4 bits (43), Expect(2) = 0.63
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 453 PPPPPPXGXE 424
           PPPPPP   E
Sbjct: 731 PPPPPPPRVE 740


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 386 PPXPXXPXRXSSXSXPXGGGGG 451
           PP P    +  S   P GGG G
Sbjct: 97  PPSPKDDEKCLSLERPSGGGKG 118


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 608 PPPXXXXAXPGXSAXXAARAXAPPP 682
           PP     A P  S+   + A APPP
Sbjct: 12  PPAPQSAATPISSSGMTSPAAAPPP 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,915
Number of Sequences: 336
Number of extensions: 2116
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29382645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)