Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_F24
         (1033 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.47 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect(2) = 0.47
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 458 PXPPPPPPA 432
           P PPPPPP+
Sbjct: 341 PAPPPPPPS 349



 Score = 20.6 bits (41), Expect(2) = 0.47
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -3

Query: 476 GPXXXXPXPPPPPP 435
           G     P P PPPP
Sbjct: 333 GDSDTPPKPAPPPP 346


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 473  PXXXXPXPPPPPP 435
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 458  PXPPPPPPA 432
            P PPPPPP+
Sbjct: 1355 PPPPPPPPS 1363



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 458  PXPPPPPPAG 429
            P PPPPP +G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 21.4 bits (43), Expect(2) = 1.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 656  AARAXAPPPXXPPP 697
            A R   PPP  PPP
Sbjct: 1349 AWRQQQPPPPPPPP 1362



 Score = 21.0 bits (42), Expect(2) = 1.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 677  PPXXPPPPXRXXAW 718
            PP  PPPP    A+
Sbjct: 1355 PPPPPPPPSSGQAY 1368


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 680 PXXPPPPXRXXAW 718
           P  PPPP R   W
Sbjct: 374 PLPPPPPIRGGEW 386


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +2

Query: 674 PPPXXPPPPXRXXAW 718
           PP   PPPP     W
Sbjct: 660 PPDSDPPPPDDISGW 674


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,380
Number of Sequences: 438
Number of extensions: 6406
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34467615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)