Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_F22
(888 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 131 3e-30
BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 131 3e-30
AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 131 3e-30
BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 130 5e-30
BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 126 1e-28
AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 126 1e-28
AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a ... 38 0.037
AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligas... 31 5.6
AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligas... 31 5.6
AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligas... 31 5.6
AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligas... 31 5.6
AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein. 31 5.6
AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein. 31 5.6
>U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 131 bits (317), Expect = 3e-30
Identities = 62/141 (43%), Positives = 84/141 (59%)
Frame = +3
Query: 117 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 296
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 297 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQT 476
+H ++N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 477 TCHSKSKVLLKISREENQGCG 539
K+K + + E+ + G
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141
Score = 33.1 bits (72), Expect = 1.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 409 SPXINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 561
+P I++V++ PKQPVIV VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 131 bits (317), Expect = 3e-30
Identities = 62/141 (43%), Positives = 84/141 (59%)
Frame = +3
Query: 117 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 296
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 297 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQT 476
+H ++N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 477 TCHSKSKVLLKISREENQGCG 539
K+K + + E+ + G
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141
Score = 33.1 bits (72), Expect = 1.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 409 SPXINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 561
+P I++V++ PKQPVIV VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A
protein.
Length = 148
Score = 131 bits (317), Expect = 3e-30
Identities = 62/141 (43%), Positives = 84/141 (59%)
Frame = +3
Query: 117 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 296
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 297 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQT 476
+H ++N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 477 TCHSKSKVLLKISREENQGCG 539
K+K + + E+ + G
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVG 141
Score = 33.1 bits (72), Expect = 1.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 409 SPXINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 561
+P I++V++ PKQPVIV VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for
IMAGE:3543815) protein.
Length = 147
Score = 130 bits (315), Expect = 5e-30
Identities = 61/136 (44%), Positives = 82/136 (60%)
Frame = +3
Query: 132 KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 311
+KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM+++H ++
Sbjct: 5 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64
Query: 312 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTCHSK 491
N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+ K
Sbjct: 65 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVK 124
Query: 492 SKVLLKISREENQGCG 539
+K + + E+ + G
Sbjct: 125 AKFFSRRAEEKIKSVG 140
Score = 33.1 bits (72), Expect = 1.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 409 SPXINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 561
+P I++V++ PKQPVIV VGGACVL A
Sbjct: 97 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 147
>BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 126 bits (304), Expect = 1e-28
Identities = 60/141 (42%), Positives = 84/141 (59%)
Frame = +3
Query: 117 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 296
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 297 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQT 476
++ ++N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + +
Sbjct: 61 YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120
Query: 477 TCHSKSKVLLKISREENQGCG 539
K+K+ + + E+ + G
Sbjct: 121 PVIVKAKLFSRRAEEKIKSVG 141
>AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a
protein.
Length = 106
Score = 126 bits (304), Expect = 1e-28
Identities = 55/99 (55%), Positives = 67/99 (67%)
Frame = +3
Query: 117 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 296
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 297 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVP 413
+H ++N++FCP +NLDKLWTLVSEQTR+ A G P
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99
>AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a
protein.
Length = 34
Score = 38.3 bits (85), Expect = 0.037
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +3
Query: 333 LNLDKLWTLVSEQTRLKYASAPDGKVP 413
+NLDKLWTLVSEQTR+ A G P
Sbjct: 1 VNLDKLWTLVSEQTRVNAAKNKTGAAP 27
>AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligase E3
component n-recognin 4 protein.
Length = 5183
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 482 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 342
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligase
E3 component n-recognin 4 protein.
Length = 1672
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 482 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 342
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535
>AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligase E3
component n-recognin 4 protein.
Length = 5183
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 482 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 342
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligase
E3 component n-recognin 4 protein.
Length = 1672
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 482 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 342
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535
>AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein.
Length = 5183
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 482 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 342
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein.
Length = 1678
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 482 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 342
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 494 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 541
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,810,359
Number of Sequences: 237096
Number of extensions: 1690777
Number of successful extensions: 3403
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3396
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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