Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_F22
         (888 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.     110   2e-24
U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal prot...   110   2e-24
AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p pro...   110   2e-24
AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA...   110   2e-24
X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal prot...   109   7e-24

>U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.
          Length = 149

 Score =  110 bits (265), Expect = 2e-24
 Identities = 57/141 (40%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
 Frame = +3

Query: 129 KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 308
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 309 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTCHS 488
           +   F P +NLDKLW+LV  +   +       K P     +    ++  +   P      
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 489 KSKVLLKISREE-NQGCGWCL 548
           K+K   K + ++  +  G CL
Sbjct: 126 KAKYFSKKAEDKIKKAGGVCL 146


>U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal protein
           RpL27a protein.
          Length = 149

 Score =  110 bits (265), Expect = 2e-24
 Identities = 57/141 (40%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
 Frame = +3

Query: 129 KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 308
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 309 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTCHS 488
           +   F P +NLDKLW+LV  +   +       K P     +    ++  +   P      
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 489 KSKVLLKISREE-NQGCGWCL 548
           K+K   K + ++  +  G CL
Sbjct: 126 KAKYFSKKAEDKIKKAGGVCL 146


>AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p
           protein.
          Length = 149

 Score =  110 bits (265), Expect = 2e-24
 Identities = 57/141 (40%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
 Frame = +3

Query: 129 KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 308
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 309 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTCHS 488
           +   F P +NLDKLW+LV  +   +       K P     +    ++  +   P      
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 489 KSKVLLKISREE-NQGCGWCL 548
           K+K   K + ++  +  G CL
Sbjct: 126 KAKYFSKKAEDKIKKAGGVCL 146


>AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA
           protein.
          Length = 149

 Score =  110 bits (265), Expect = 2e-24
 Identities = 57/141 (40%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
 Frame = +3

Query: 129 KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 308
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 309 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTCHS 488
           +   F P +NLDKLW+LV  +   +       K P     +    ++  +   P      
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 489 KSKVLLKISREE-NQGCGWCL 548
           K+K   K + ++  +  G CL
Sbjct: 126 KAKYFSKKAEDKIKKAGGVCL 146


>X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal protein
           L27a protein.
          Length = 149

 Score =  109 bits (261), Expect = 7e-24
 Identities = 56/141 (39%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
 Frame = +3

Query: 129 KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 308
           +KKTRKLRGHVS                 N GG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 309 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTCHS 488
           +   F P +NLDKLW+LV  +   +       K P     +    ++  +   P      
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 489 KSKVLLKISREE-NQGCGWCL 548
           K+K   K + ++  +  G CL
Sbjct: 126 KAKYFSKKAEDKIKEAGGVCL 146


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,437,672
Number of Sequences: 53049
Number of extensions: 523425
Number of successful extensions: 1639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4332305172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)