Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_F19
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   2.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 336 GTPRLKDHSSTRVGTVC*GFNFKYF 262
           G+P +K H S+   T C G   + F
Sbjct: 276 GSPPVKQHRSSSASTTCSGHTVRCF 300


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 570 DLRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLEHE 406
           D R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+L  E
Sbjct: 281 DYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 570 DLRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLEHE 406
           D R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+L  E
Sbjct: 281 DYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 570 DLRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLEHE 406
           D R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+L  E
Sbjct: 281 DYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,221
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)