Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_F17
         (864 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.1  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   5.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   7.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 410 SPTLLRNYPML*AQRHTGLGVAVSCC*RTQPSPSM-W*KW 526
           +P    +  +L  QRH+   VA+ C  +  PSPS  W K+
Sbjct: 230 APAFSTDIKVLGYQRHSKQNVALLCPAQGFPSPSFRWYKF 269


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 50  LLAYPPKVVVLYNPSKL 100
           LL+YP   V L NP KL
Sbjct: 327 LLSYPEVCVKLANPQKL 343


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 535  CISPLLPHRRARLGPLATTHGDSETGMSLGS 443
            C +   P    R G   +T+GD + G SLG+
Sbjct: 931  CRNSASPASSDRSGTPRSTNGDRKPGGSLGA 961


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 313 LFQCLMEGTGQQTSFELPV 369
           L  C   G+G+  +F LP+
Sbjct: 198 LMSCAQTGSGKTAAFMLPI 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,538
Number of Sequences: 336
Number of extensions: 3994
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23789590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)