Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_F16
         (909 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQA8 Cluster: Transcriptional adaptor 3; n=1; Bombyx ...   247   3e-64
UniRef50_UPI0000D5641C Cluster: PREDICTED: similar to Transcript...    60   6e-08
UniRef50_UPI000051A658 Cluster: PREDICTED: similar to transcript...    55   3e-06
UniRef50_UPI00015B5E59 Cluster: PREDICTED: similar to transcript...    50   1e-04
UniRef50_Q9VWZ1 Cluster: CG7098-PA; n=2; Sophophora|Rep: CG7098-...    41   0.038
UniRef50_O75528 Cluster: Transcriptional adapter 3-like; n=36; E...    36   1.4  

>UniRef50_Q1HQA8 Cluster: Transcriptional adaptor 3; n=1; Bombyx
           mori|Rep: Transcriptional adaptor 3 - Bombyx mori (Silk
           moth)
          Length = 460

 Score =  247 bits (604), Expect = 3e-64
 Identities = 119/137 (86%), Positives = 120/137 (87%)
 Frame = +1

Query: 292 MLGKRMHHNSKGRLANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETCPIPYIKIQDN 471
           MLGKRMHHNSKGRLANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETCPIPYIKIQDN
Sbjct: 1   MLGKRMHHNSKGRLANKDNGKPSSPGITPYTKPTKIPGSVSTAKIKVETCPIPYIKIQDN 60

Query: 472 AVLLPRFTAVAARSADEPIGMDXXXXXXXXXXXXXCNTALRCRYFQSEIESIDSNESKRE 651
           AVLLPRFTAVAARSADEPIGMD             CNTALRCRYFQSEIESIDSNESKRE
Sbjct: 61  AVLLPRFTAVAARSADEPIGMDELDGLQLELESLLCNTALRCRYFQSEIESIDSNESKRE 120

Query: 652 KKGKAAGKQLXVSCKKK 702
           KKGKAAGKQL    K+K
Sbjct: 121 KKGKAAGKQLQYPVKRK 137



 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 29/51 (56%), Positives = 30/51 (58%)
 Frame = +2

Query: 644 KEKKKAKQPVNSYXYPVKRKFQXXXXXXXXXXXXLSNQPKVPKFKNFSNAS 796
           K +KK K       YPVKRKFQ            LSNQPKVPKFKNFSNAS
Sbjct: 118 KREKKGKAAGKQLQYPVKRKFQDDKVVKTKDYTKLSNQPKVPKFKNFSNAS 168


>UniRef50_UPI0000D5641C Cluster: PREDICTED: similar to
           Transcriptional adapter 3-like (ADA3-like protein) (ADA3
           homolog) (hADA3); n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to Transcriptional adapter 3-like
           (ADA3-like protein) (ADA3 homolog) (hADA3) - Tribolium
           castaneum
          Length = 434

 Score = 60.5 bits (140), Expect = 6e-08
 Identities = 30/77 (38%), Positives = 43/77 (55%)
 Frame = +1

Query: 445 IPYIKIQDNAVLLPRFTAVAARSADEPIGMDXXXXXXXXXXXXXCNTALRCRYFQSEIES 624
           +P I+  DN  LLPRF+++  R+ D+ + MD                A+R R+ + EIES
Sbjct: 42  VPLIRQCDNTKLLPRFSSILGRTEDDGVNMDDLDQLQLDLEKLISTCAVRNRFLRGEIES 101

Query: 625 IDSNESKREKKGKAAGK 675
           ID  E KR+KKGK+  K
Sbjct: 102 IDRVEEKRDKKGKSYDK 118


>UniRef50_UPI000051A658 Cluster: PREDICTED: similar to
           transcriptional adaptor 3 (NGG1 homolog, yeast)-like;
           n=1; Apis mellifera|Rep: PREDICTED: similar to
           transcriptional adaptor 3 (NGG1 homolog, yeast)-like -
           Apis mellifera
          Length = 461

 Score = 54.8 bits (126), Expect = 3e-06
 Identities = 29/82 (35%), Positives = 47/82 (57%)
 Frame = +1

Query: 454 IKIQDNAVLLPRFTAVAARSADEPIGMDXXXXXXXXXXXXXCNTALRCRYFQSEIESIDS 633
           +KI DN+ LLPR++++  RSA+E +GM+              +  +R R  Q EI ++ S
Sbjct: 46  LKIADNSRLLPRYSSILQRSAEEGVGMEDLDTLQLELEMLLSSVVVRHRMLQEEITNLSS 105

Query: 634 NESKREKKGKAAGKQLXVSCKK 699
            E +R+K+ K +GK L +  KK
Sbjct: 106 AEERRDKRSK-SGKGLSLLDKK 126


>UniRef50_UPI00015B5E59 Cluster: PREDICTED: similar to
           transcriptional adaptor 3; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to transcriptional adaptor 3 -
           Nasonia vitripennis
          Length = 464

 Score = 49.6 bits (113), Expect = 1e-04
 Identities = 26/84 (30%), Positives = 46/84 (54%)
 Frame = +1

Query: 448 PYIKIQDNAVLLPRFTAVAARSADEPIGMDXXXXXXXXXXXXXCNTALRCRYFQSEIESI 627
           P IK+ DN+ +LPR+++V  R+ ++ I M+              +  +R R  Q EI S+
Sbjct: 45  PVIKMIDNSKVLPRYSSVLQRNTEDGINMEDLDTLQLELEMLLSSVVVRSRMLQEEIASL 104

Query: 628 DSNESKREKKGKAAGKQLXVSCKK 699
            ++E +R+++ K +GK L    KK
Sbjct: 105 SASEERRDRRSK-SGKGLACIDKK 127


>UniRef50_Q9VWZ1 Cluster: CG7098-PA; n=2; Sophophora|Rep: CG7098-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 556

 Score = 41.1 bits (92), Expect = 0.038
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 445 IPYIKIQDNAVLLPRFTAVAARSADEPIGMDXXXXXXXXXXXXXCNTALRCRYFQSEIES 624
           IP I+ +D   LLP   A   R AD+ +  +              N ALR R  ++E +S
Sbjct: 64  IPIIRTRDVPKLLPTIAAALQRPADDHLAAEDLDAVQLELEQMLSNVALRTRVLKAEYDS 123

Query: 625 IDSNESKREKK 657
           +D +E +++++
Sbjct: 124 LDKDEKRQDRR 134


>UniRef50_O75528 Cluster: Transcriptional adapter 3-like; n=36;
           Euteleostomi|Rep: Transcriptional adapter 3-like - Homo
           sapiens (Human)
          Length = 432

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 427 KVETCPIPY--IKIQDNAVLLPRFTAVAARSADEPIGMDXXXXXXXXXXXXXCNTALRCR 600
           +++ CP+ +   K  D+  + PR+TAV ARS D+ IG++              + + R R
Sbjct: 3   ELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRRLR 62

Query: 601 YFQSEIESIDSNESKR 648
             ++E + +   + K+
Sbjct: 63  VLEAETQILTDWQDKK 78


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 720,519,732
Number of Sequences: 1657284
Number of extensions: 12326328
Number of successful extensions: 29885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29868
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)