Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_F14
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0042 + 337131-337612,338727-338898,338996-339204,339414-33...    29   4.9  
11_01_0043 + 328272-328753,329233-329298,330082-330253,330357-33...    29   4.9  
03_06_0158 + 32052426-32052529,32052645-32052702,32052847-320529...    29   4.9  
06_01_0689 + 5028932-5031013                                           29   6.5  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   6.5  
09_02_0612 + 11239675-11240140,11240587-11240687                       28   8.6  

>12_01_0042 +
           337131-337612,338727-338898,338996-339204,339414-339572,
           339914-340262
          Length = 456

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +2

Query: 356 SKEI-GTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFESTFSVPVSPQKPN 532
           +KEI GT+ PK I  +++ I        QL+E+RKD +   FR  +     VP++  K  
Sbjct: 378 AKEIFGTLEPKGIHVQILNIT-------QLSEYRKDAHPTIFRRQY-----VPLT--KEQ 423

Query: 533 QAETTVEKPLSSWPLPG 583
            A  ++    + W LPG
Sbjct: 424 IANPSIYADCTHWCLPG 440


>11_01_0043 +
           328272-328753,329233-329298,330082-330253,330357-330565,
           330779-330937,331279-331627
          Length = 478

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +2

Query: 356 SKEI-GTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFESTFSVPVSPQKPN 532
           +KEI GT+ PK I  +++ I        QL+E+RKD +   FR  +     VP++  K  
Sbjct: 400 AKEIFGTLEPKGIHVQILNIT-------QLSEYRKDAHPTIFRRQY-----VPLT--KEQ 445

Query: 533 QAETTVEKPLSSWPLPG 583
            A  ++    + W LPG
Sbjct: 446 IANPSIYADCTHWCLPG 462


>03_06_0158 +
           32052426-32052529,32052645-32052702,32052847-32052983,
           32053824-32053899,32053965-32054017,32054415-32054896,
           32055097-32055184,32055482-32055665,32056443-32056640,
           32057351-32057534,32057982-32058109,32058236-32058317,
           32058444-32058496,32058625-32058700,32059253-32059314
          Length = 654

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 179 NYFVSIP*SIPGRMRPYRYKRFSDVPEGIINKLRQRAFHKYPDLE 313
           ++F  +  S+ G   PY     + + +  +NK ++ A+ K+ +LE
Sbjct: 434 DFFALVGMSVDGSYAPYHANNLNQLQQRKMNKWKESAYQKFEELE 478


>06_01_0689 + 5028932-5031013
          Length = 693

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 669 LLVXQIRSSYRNXAIGGTGIELWTEEADAPGKGQELRGFSTVVSAW 532
           LL  +  S Y   A GGT + +W   A A G  ++L     + SAW
Sbjct: 557 LLTGKFPSLYLQNAKGGTDLVMWATSAIADGYERDLFD-KAITSAW 601


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 221 RPYRYKRFSDVPEGIIN-KLRQRAFHKYPDLEF-YWDPDNKTFL 346
           + Y+Y  F+  P  II  K+      K  D  F YWDPD K ++
Sbjct: 192 KKYQYLLFAAEPYEIIGFKIPSAEIDKSADKFFNYWDPDKKQYI 235


>09_02_0612 + 11239675-11240140,11240587-11240687
          Length = 188

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 627 IGGTGIELWTEEADAPGKGQELRGFSTVVSAWL 529
           + G G+  W  ++  P +    RG +++V AW+
Sbjct: 68  VDGAGVAAWAPQSAPPARSSWSRGSASMVRAWV 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,175,199
Number of Sequences: 37544
Number of extensions: 319664
Number of successful extensions: 646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)