Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_F09
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313... 31 1.6
03_05_0632 + 26264150-26264195,26266139-26266623,26266650-262667... 29 3.8
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267 29 3.8
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 29 3.8
01_05_0091 + 18048595-18050559 29 3.8
11_06_0586 + 25253863-25254285 29 5.0
12_02_0139 - 14277389-14279119 29 6.7
11_06_0092 + 19973364-19975983,19976272-19976648 29 6.7
05_05_0082 + 22252993-22255617 29 6.7
02_01_0353 + 2545982-2549833 29 6.7
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 28 8.8
09_06_0094 - 20831530-20831997 28 8.8
>08_02_0819 -
21529913-21530064,21531016-21531082,21531284-21531373,
21531506-21531622,21532026-21532145,21532313-21533581
Length = 604
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 485 PFRNTCRPLGRRSTLVRR-KIGASPRPPAAASTI 583
P +N P GRR + R K G +P P AAAS++
Sbjct: 26 PEKNIAAPAGRRREVASRFKSGGTPAPQAAASSV 59
>03_05_0632 +
26264150-26264195,26266139-26266623,26266650-26266739,
26266821-26267189
Length = 329
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 601 KRKNAPAPEQIVGKEKRRKKLDEIVLGLSAA---KSGMTSANVSSDA 732
++ +AP E +V + KRR+K+++ + LSA M A + SDA
Sbjct: 171 RKTSAPTLEHVVAERKRREKINQRFMELSAVIPKLKKMDKATILSDA 217
>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
Length = 346
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 478 PQPFPQHLSTSRAPLDLSEAQDRREPAATRSRLDDTLNKLMKRKNAPA--PEQIVGKE 645
P P P+ + ++ +D R+PA+ +RL LN + K APA P G E
Sbjct: 162 PGPAPEKKAKKPGASIRAKLRDLRKPASPGARLAGFLNSIFAGKRAPATPPSATAGAE 219
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 328 SPSTLRRTEPNSMRCFQHRRPHTRPAEVQXXXXXXXXXXXXXHINEPRLRPQPFPQHLST 507
+PSTLRR P S R P+++P+++ R+RP P P+
Sbjct: 21 APSTLRRNPPRSARPPPTPLPNSKPSQISRLLEEAAERLKVF----LRIRPLPLPERKGK 76
Query: 508 SRAP 519
+++P
Sbjct: 77 AKSP 80
>01_05_0091 + 18048595-18050559
Length = 654
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +1
Query: 496 HLSTSRA---PLDLSEAQDRREPAATRSRLDDTLNKLMKRKNAPAPEQIVGKEKRRKKLD 666
+L T +A P+D A D PA++ S LDD L + P+ + + K K
Sbjct: 457 YLPTGKAEDGPVDYPHANDPLLPASSESALDDKLKTIQPVTGGKKPKAVKSRPKVVKLDG 516
Query: 667 EIVLGLSAAKSGMTSANVSSDAGR 738
E L A + + + S A R
Sbjct: 517 EDFLSSMVASASVPKEDSLSGAVR 540
>11_06_0586 + 25253863-25254285
Length = 140
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -3
Query: 522 ERRPRGRQVLRKGLRAQARLVDVRAAEQSRPERRAGLHFRWPGVRPPVLKATHGVWLGPS 343
+ +P V R+ + + +RAA SR RW RP + + G W P+
Sbjct: 23 KEKPARATVFRRSSGEEEVMPGMRAASWSRG--------RWWRRRPVLRQGDRGGWRRPA 74
Query: 342 QRRWRYVAGHA 310
+R+W+ G+A
Sbjct: 75 RRKWKGDGGNA 85
>12_02_0139 - 14277389-14279119
Length = 576
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +1
Query: 271 PQNLTFLAKQRNESMSGDISPSTLRRTEPNSMRCFQHRRPHTRPAEVQXXXXXXXXXXXX 450
P N+ LA ++ +S ISP+T + H H PA +
Sbjct: 13 PANVMTLASRQPKSKRSHISPATTAHRNLQTRLAHHH---HATPASLPMAICNTVDKVIN 69
Query: 451 XHINEPRLRPQPFPQH-LSTSRAPLD 525
I+ P RP P+ LS + AP+D
Sbjct: 70 RFIDLPEQRPTVDPRRVLSGNFAPVD 95
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -1
Query: 422 GRGCTSAGLVCGRRC*KQRMEFGSVRLNVDGDMSPDM--LSFL 300
G+ CT G+VCGRR + ++ N+ G +SP + LSFL
Sbjct: 62 GQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGIISPSLGNLSFL 104
>05_05_0082 + 22252993-22255617
Length = 874
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = +1
Query: 460 NEPRLRPQPFPQHLSTSRAPLDLSEAQDRREPAATRSRLDDTLNKLMKRKNAPAPEQIVG 639
N L P+ P+ L+T +P + + R+P R LD+ + +R A +++
Sbjct: 17 NAVNLAPEQVPKLLATRASPARVEDGVCLRDPPGARYPLDE----IPRRDAAVGANRVLF 72
Query: 640 KEKRRKKLDEIVLGLSAAKSG 702
RR + E++ S A+ G
Sbjct: 73 DYARRGMVLEVLDQFSVARRG 93
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 601 KRKNAPAPEQIVGKEKRRKKLDEIVLGLSAAKSGMTSANVSSD 729
K K A +Q V KRR + D+ G ++A +G A SSD
Sbjct: 179 KEKKAVPEQQPVAAPKRRNRWDQSQDGDASAAAGSKKAKTSSD 221
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 478 PQPFPQHLSTSRAPLDLSEAQDRREPAATRSRLDDTLNKL--MKRKNAPAPEQIVGKEKR 651
P P P STS + S +Q + +P A RL D +L +R A E + EKR
Sbjct: 17 PLPPPPPPSTSSSQKSPSPSQPQPQPHAQAQRLHDLAAELEEERRLRRKAEESLAEAEKR 76
Query: 652 RKKL 663
+++
Sbjct: 77 SERV 80
>09_06_0094 - 20831530-20831997
Length = 155
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 576 EAAAGGRGLAPILRLTKVERRPRG 505
EAAAG AP++ +KV R+P G
Sbjct: 49 EAAAGAARSAPLMATSKVSRKPAG 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,959,482
Number of Sequences: 37544
Number of extensions: 443330
Number of successful extensions: 1594
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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