Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_F06
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031630-20|CAE17995.1|  122|Caenorhabditis elegans Hypothetical...    33   0.36 
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AL031630-19|CAA20999.1|  123|Caenorhabditis elegans Hypothetical...    29   4.4  

>AL031630-20|CAE17995.1|  122|Caenorhabditis elegans Hypothetical
           protein Y38H6C.23 protein.
          Length = 122

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 288 WCSIPACAPKYCSKDXKXXTPWNCLXQ 368
           WC I  C P  C +D K  TP  C+ +
Sbjct: 43  WCEIKLCGPGKCMEDPKSTTPIRCVCE 69


>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
           protein B0198.3 protein.
          Length = 1050

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 167 KYKLFRIRTCVRFDSCQIRANDTDCVRH 84
           K KLF+ RTCVRF   + R ++TD + H
Sbjct: 60  KSKLFKKRTCVRFGEIKERISNTDTLYH 87


>AL031630-19|CAA20999.1|  123|Caenorhabditis elegans Hypothetical
           protein Y38H6C.22 protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +3

Query: 285 LWCSIPACAPKYCSKDXKXXTPWNCLXQXXQSXSPG 392
           +WC I  C P  C +D     P  C+ +     + G
Sbjct: 42  VWCEIKLCGPGQCIEDPMTTAPARCVCEKCYRDNSG 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,712,813
Number of Sequences: 27780
Number of extensions: 121766
Number of successful extensions: 231
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)