Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_F05
         (972 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   1.2  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    22   8.3  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    22   8.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   8.3  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 256 SVAVTMHRLVERRHPVEILRAEEFSIHQTKWS 161
           SV V+M+  +   HP     A E S  Q +WS
Sbjct: 148 SVNVSMNMTMHGYHPSSSYPANEISCPQVQWS 179


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 405 LKSHPTTRSFRSISTYNIF 461
           ++SHP    ++   TYN+F
Sbjct: 192 VESHPNITWYQQCVTYNVF 210


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 405 LKSHPTTRSFRSISTYNIF 461
           ++SHP    ++   TYN+F
Sbjct: 192 VESHPNITWYQQCVTYNVF 210


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 329 QIENVMKPIEQ-LASAMNQMALQEMGSKITSND 424
           ++ENV       + + +N M L E+  K+T ND
Sbjct: 120 EVENVEDLFTSGITTGVNFMKLDEIEVKVTGND 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,748
Number of Sequences: 336
Number of extensions: 3301
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27513178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)