Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_F05
(972 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1036 - 23430643-23431311,23431441-23431668 33 0.34
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 33 0.45
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 31 1.0
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 29 5.6
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 29 7.4
08_01_0863 + 8437188-8437337,8437649-8437739,8437913-8438002,843... 29 7.4
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 29 7.4
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 28 9.8
04_04_0947 - 29583775-29583931,29584030-29584256 28 9.8
01_01_0809 + 6294991-6295044,6295099-6296334 28 9.8
>07_03_1036 - 23430643-23431311,23431441-23431668
Length = 298
Score = 33.1 bits (72), Expect = 0.34
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +3
Query: 528 SRISTGMCRDSS----SDDTRYHKGCLPDTVESKLSSDGVLTVTAPKVLALPSTG-EKIV 692
+ + +CR++ D T Y KGC P + +S G+ ++ ++L+ PS+ V
Sbjct: 53 NEVLKALCREAGWVVEDDGTTYRKGCKPPPSSAGGASVGMSPCSSTQLLSAPSSSFPSPV 112
Query: 693 PITHTGPVMKSVQTRXLIGXP 755
P H P S + I P
Sbjct: 113 PSYHASPASSSFPSPSRIDNP 133
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 32.7 bits (71), Expect = 0.45
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 331 NRKRNETDRAAGFGDESNGASGDGL*NHIQRREVSG-QYRRTTFFTG*NKC 480
+R+RN DR + +NG S DGL + ++R +++G + RTT + C
Sbjct: 148 SRQRNIEDRLRERDEAANGGSSDGLQDRMERSKIAGVRLNRTTTSSSSEPC 198
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 227 NQSMHRDRYRMSPFNQFRDVVEPQFYRPWENT 322
++SMHRDRY P +FR E R WEN+
Sbjct: 117 HRSMHRDRYERQPSGRFRQWPE----RQWENS 144
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 111 RTNKKRCQFCHTCTIWRDHFV*WIENSSARR 203
R N K C+ C C DH W+ N R+
Sbjct: 117 RKNSKHCRSCDKCVDGFDHHCRWLNNCVGRK 147
>12_01_1073 +
11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 28.7 bits (61), Expect = 7.4
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 166 ISSDGSRTLRPAGFLQDVAFQPIDAS*PLQNVSVQSISRRC*TAVLQT----LGKY 321
+SSD + T+R A L A P+ L N+ + +S RC +AV + LG+Y
Sbjct: 529 LSSDTTNTVRRARELMASAIDPLQLVSQLANLIMDILSGRCQSAVTEVSKSFLGRY 584
>08_01_0863 +
8437188-8437337,8437649-8437739,8437913-8438002,
8438099-8438202,8439137-8439277
Length = 191
Score = 28.7 bits (61), Expect = 7.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 307 SVKLRFNNVAKLIERRHSVAVTMHRLVERRHPVEILRAEEFSIHQTKWSLQIVH 146
+V++ N + I H AVT + E + P+EIL A+ ++ + Q VH
Sbjct: 84 AVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQFVH 137
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.7 bits (61), Expect = 7.4
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 241 MHRLVERRHPVEILRAEEFSIHQTKWSL-QIVHVWQN*HR 125
+H+ +RH +E L ++ S HQ + Q H WQ HR
Sbjct: 737 LHKYANKRHSLEELPSDTSSPHQKHHQMSQEKHHWQQKHR 776
>12_02_0849 -
23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 28.3 bits (60), Expect = 9.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 661 STLGAVTVRTPSEDNFDSTVSGKQPL 584
S LG VTV TP D+ +S +GK L
Sbjct: 826 SLLGEVTVSTPKPDSIESIPTGKSDL 851
>04_04_0947 - 29583775-29583931,29584030-29584256
Length = 127
Score = 28.3 bits (60), Expect = 9.8
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 272 D*TETFCSGHDASIG*KATSCRNPAGRRVLDPSDE 168
D E SGH AS A S R P GR DP D+
Sbjct: 11 DDIEAGFSGHSASPVKPAASPRRPGGRLFCDPCDD 45
>01_01_0809 + 6294991-6295044,6295099-6296334
Length = 429
Score = 28.3 bits (60), Expect = 9.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 539 HGYVSRQFIRRYALPQGLFTRHGGIE 616
+G V+++ I + L GLF RHGG++
Sbjct: 401 NGRVAQEMIEDWVLQAGLFGRHGGMK 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,333,776
Number of Sequences: 37544
Number of extensions: 367923
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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