Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_F04
         (895 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   5.6  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   5.6  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   5.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.9  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 115 IKREHELSSCKLSLRARCINHLQN 44
           +K E    SC+ S+    +NH  N
Sbjct: 49  VKEEPIYESCRFSINQPYLNHFDN 72


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 115 IKREHELSSCKLSLRARCINHLQN 44
           +K E    SC+ S+    +NH  N
Sbjct: 49  VKEEPIYESCRFSINQPYLNHFDN 72


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 115 IKREHELSSCKLSLRARCINHLQN 44
           +K E    SC+ S+    +NH  N
Sbjct: 49  VKEEPIYESCRFSINQPYLNHFDN 72


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 577 PLRGTXXPAPEXXXPAXPXP 518
           P  GT  P P+   P  P P
Sbjct: 73  PSDGTTSPEPDPEIPVAPEP 92


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 422 PXTPPTPXP 396
           P TPPTP P
Sbjct: 95  PTTPPTPSP 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,572
Number of Sequences: 336
Number of extensions: 1116
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)