Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_F04
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 38 0.007
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 38 0.007
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 38 0.007
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.64
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.64
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.64
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 31 0.84
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 4.5
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 5.9
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 5.9
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 38.3 bits (85), Expect = 0.007
Identities = 27/118 (22%), Positives = 33/118 (27%), Gaps = 3/118 (2%)
Frame = -3
Query: 695 PXGXTXPXPXXXXXXPXXXXGARPXX---GG*PPXPXXPXXPPXAGNRXPRPXXXRXRXX 525
P G P P P G+ P G PP PP G+ P P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 524 XSGGPXAXEXPKXEXXAXXXXXXXXPGRXPDPXXPXTPPTPXPEXWGLKRMPPXXXXP 351
+G P P+ G P PP P + +R PP P
Sbjct: 293 RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPP 350
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/77 (25%), Positives = 23/77 (29%)
Frame = -3
Query: 626 PXXGG*PPXPXXPXXPPXAGNRXPRPXXXRXRXXXSGGPXAXEXPKXEXXAXXXXXXXXP 447
P G PP P PP AG+ P P +G P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPP------PPAAGSPPPPRTGSPPPPPTGSPPPPPA 285
Query: 446 GRXPDPXXPXTPPTPXP 396
G P P +PP P P
Sbjct: 286 GGSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 38.3 bits (85), Expect = 0.007
Identities = 27/118 (22%), Positives = 33/118 (27%), Gaps = 3/118 (2%)
Frame = -3
Query: 695 PXGXTXPXPXXXXXXPXXXXGARPXX---GG*PPXPXXPXXPPXAGNRXPRPXXXRXRXX 525
P G P P P G+ P G PP PP G+ P P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 524 XSGGPXAXEXPKXEXXAXXXXXXXXPGRXPDPXXPXTPPTPXPEXWGLKRMPPXXXXP 351
+G P P+ G P PP P + +R PP P
Sbjct: 314 RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPP 371
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/77 (25%), Positives = 23/77 (29%)
Frame = -3
Query: 626 PXXGG*PPXPXXPXXPPXAGNRXPRPXXXRXRXXXSGGPXAXEXPKXEXXAXXXXXXXXP 447
P G PP P PP AG+ P P +G P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPP------PPAAGSPPPPRTGSPPPPPTGSPPPPPA 306
Query: 446 GRXPDPXXPXTPPTPXP 396
G P P +PP P P
Sbjct: 307 GGSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 38.3 bits (85), Expect = 0.007
Identities = 27/118 (22%), Positives = 33/118 (27%), Gaps = 3/118 (2%)
Frame = -3
Query: 695 PXGXTXPXPXXXXXXPXXXXGARPXX---GG*PPXPXXPXXPPXAGNRXPRPXXXRXRXX 525
P G P P P G+ P G PP PP G+ P P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 524 XSGGPXAXEXPKXEXXAXXXXXXXXPGRXPDPXXPXTPPTPXPEXWGLKRMPPXXXXP 351
+G P P+ G P PP P + +R PP P
Sbjct: 299 RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPP 356
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/77 (25%), Positives = 23/77 (29%)
Frame = -3
Query: 626 PXXGG*PPXPXXPXXPPXAGNRXPRPXXXRXRXXXSGGPXAXEXPKXEXXAXXXXXXXXP 447
P G PP P PP AG+ P P +G P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPP------PPAAGSPPPPRTGSPPPPPTGSPPPPPA 291
Query: 446 GRXPDPXXPXTPPTPXP 396
G P P +PP P P
Sbjct: 292 GGSPPPPRAGSPPPPPP 308
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.64
Identities = 29/96 (30%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
Frame = -3
Query: 632 ARPXXGG*PPXPXXPXXPPXAGNRXPRPXXXRXRXXXSGGPXAXEXPKXEXXAXXXXXXX 453
A P G PP P P PP G P P +GGP P
Sbjct: 705 ALPPITGGPPPP--PGLPPITGGPPPPPPPGGL-PPITGGPPPPPPP-------GGLPPI 754
Query: 452 XPGRXPDPXXPX--TPPTPXPEXWGLKRMPPXXXXP 351
G P P P PP P P G K PP P
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 31.9 bits (69), Expect = 0.64
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -3
Query: 704 GGGPXGXTXPXPXXXXXXPXXXXGARPXXGG*PPXPXXPXXPPXAGNRXPRP 549
GG P P P G P GG PP P PP +G P P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -3
Query: 650 PXXXXGARPXXGG*PPXPXXPXXPPXAGNRXPRPXXXRXRXXXSGGPXAXEXP 492
P G P GG PP P PP G P P SGGP P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGG-PPPPPPPGGLPPISGGPPPPPPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.64
Identities = 29/96 (30%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
Frame = -3
Query: 632 ARPXXGG*PPXPXXPXXPPXAGNRXPRPXXXRXRXXXSGGPXAXEXPKXEXXAXXXXXXX 453
A P G PP P P PP G P P +GGP P
Sbjct: 705 ALPPITGGPPPP--PGLPPITGGPPPPPPPGGL-PPITGGPPPPPPP-------GGLPPI 754
Query: 452 XPGRXPDPXXPX--TPPTPXPEXWGLKRMPPXXXXP 351
G P P P PP P P G K PP P
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 31.9 bits (69), Expect = 0.64
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -3
Query: 704 GGGPXGXTXPXPXXXXXXPXXXXGARPXXGG*PPXPXXPXXPPXAGNRXPRP 549
GG P P P G P GG PP P PP +G P P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -3
Query: 650 PXXXXGARPXXGG*PPXPXXPXXPPXAGNRXPRPXXXRXRXXXSGGPXAXEXP 492
P G P GG PP P PP G P P SGGP P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGG-PPPPPPPGGLPPISGGPPPPPPP 764
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.64
Identities = 29/96 (30%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
Frame = -3
Query: 632 ARPXXGG*PPXPXXPXXPPXAGNRXPRPXXXRXRXXXSGGPXAXEXPKXEXXAXXXXXXX 453
A P G PP P P PP G P P +GGP P
Sbjct: 288 ALPPITGGPPPP--PGLPPITGGPPPPPPPGGL-PPITGGPPPPPPP-------GGLPPI 337
Query: 452 XPGRXPDPXXPX--TPPTPXPEXWGLKRMPPXXXXP 351
G P P P PP P P G K PP P
Sbjct: 338 SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 31.9 bits (69), Expect = 0.64
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -3
Query: 704 GGGPXGXTXPXPXXXXXXPXXXXGARPXXGG*PPXPXXPXXPPXAGNRXPRP 549
GG P P P G P GG PP P PP +G P P
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -3
Query: 650 PXXXXGARPXXGG*PPXPXXPXXPPXAGNRXPRPXXXRXRXXXSGGPXAXEXP 492
P G P GG PP P PP G P P SGGP P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGG-PPPPPPPGGLPPISGGPPPPPPP 347
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 31.5 bits (68), Expect = 0.84
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Frame = -2
Query: 642 GXGGKTFXXGXTPXPXXXXXPPX--CGEPXPPPXXXPXPXXRIRGPEXGRXPXXG 484
G GG G P P PP CG PPP P P G P G
Sbjct: 23 GGGGGGCGCGAPPPPPACAPPPAPACGGGAPPPPAYAAPAPSYGAPAGGAYPVGG 77
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -3
Query: 437 PDPXXPXTPPTPXPEXWGLKRMPPXXXXPXXPXDNAHFXR 318
P P TPP+P P R PP P P N+H R
Sbjct: 167 PQRRPPRTPPSPEPR--NPPRTPPSPIPPPPPRLNSHDRR 204
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = -1
Query: 820 GXRPXXPXAFRXXPRXXXXXXXGXPPLXXXXXXPRGPXXGAG 695
G P F+ P+ G PPL PRGP G G
Sbjct: 131 GGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMG 172
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = -1
Query: 820 GXRPXXPXAFRXXPRXXXXXXXGXPPLXXXXXXPRGPXXGAG 695
G P F+ P+ G PPL PRGP G G
Sbjct: 411 GGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMG 452
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,587,769
Number of Sequences: 27780
Number of extensions: 167209
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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