Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_F03
(775 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 30 2.1
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 30 2.1
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 29 4.9
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 29 4.9
Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical pr... 24 8.9
AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein. 24 8.9
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 24 9.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 24 9.1
Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical pr... 24 9.2
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 530 GXXGXPXXXXGGGGGGXXXXXPXPFFXXXKKKXXPP 423
G G P GGGGGG P P K + PP
Sbjct: 622 GGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 530 GXXGXPXXXXGGGGGGXXXXXPXPFFXXXKKKXXPP 423
G G P GGGGGG P P K + PP
Sbjct: 622 GGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRPP 657
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 442 FXXXKXGXGXXXNXPPPPPPXXXXGXPXXP 531
F G G PPPPPP G P P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGAPALP 46
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 442 FXXXKXGXGXXXNXPPPPPPXXXXGXPXXP 531
F G G PPPPPP G P P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGGPSLP 46
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 442 FXXXKXGXGXXXNXPPPPPPXXXXGXPXXP 531
F G G PPPPPP G P P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGAPALP 46
>Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical
protein D2045.1a protein.
Length = 959
Score = 24.2 bits (50), Expect(2) = 8.9
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 484 PPPPPPXXXXGXP 522
PPPPPP G P
Sbjct: 937 PPPPPPPSQQGTP 949
Score = 21.8 bits (44), Expect(2) = 8.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 466 GXXXNXPPPPPP 501
G PPPPPP
Sbjct: 932 GQQSGPPPPPPP 943
>AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein.
Length = 959
Score = 24.2 bits (50), Expect(2) = 8.9
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 484 PPPPPPXXXXGXP 522
PPPPPP G P
Sbjct: 937 PPPPPPPSQQGTP 949
Score = 21.8 bits (44), Expect(2) = 8.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 466 GXXXNXPPPPPP 501
G PPPPPP
Sbjct: 932 GQQSGPPPPPPP 943
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 24.2 bits (50), Expect(2) = 9.1
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +1
Query: 403 GXFXXXGGGXFFFFXXXKXGXGXXXNXPPPPPP 501
G + GG G G PPPPPP
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
Score = 21.8 bits (44), Expect(2) = 9.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 484 PPPPPPXXXXG 516
PPPPPP G
Sbjct: 674 PPPPPPPPMPG 684
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 24.2 bits (50), Expect(2) = 9.1
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +1
Query: 403 GXFXXXGGGXFFFFXXXKXGXGXXXNXPPPPPP 501
G + GG G G PPPPPP
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
Score = 21.8 bits (44), Expect(2) = 9.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 484 PPPPPPXXXXG 516
PPPPPP G
Sbjct: 674 PPPPPPPPMPG 684
>Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical
protein D2045.1b protein.
Length = 634
Score = 24.2 bits (50), Expect(2) = 9.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 484 PPPPPPXXXXGXP 522
PPPPPP G P
Sbjct: 612 PPPPPPPSQQGTP 624
Score = 21.8 bits (44), Expect(2) = 9.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 466 GXXXNXPPPPPP 501
G PPPPPP
Sbjct: 607 GQQSGPPPPPPP 618
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,368,493
Number of Sequences: 27780
Number of extensions: 113959
Number of successful extensions: 1418
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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