Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_E24
         (918 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0270 + 14445240-14445464,14445490-14445655,14446193-144463...    29   3.9  
07_03_1160 - 24430240-24431268                                         29   6.8  
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171     28   9.0  

>01_03_0270 +
           14445240-14445464,14445490-14445655,14446193-14446341,
           14446634-14446674,14447683-14447755
          Length = 217

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +2

Query: 425 GQXAGKGGW----RMGXSSGFXXHXXPALGRS-GAATVIXPLKGGNTGYPXNQG 571
           G+  G GGW    R+  ++G         GR  G   VI PLK    G+P + G
Sbjct: 149 GEWQGPGGWWDPVRIEGAAGSGREADDGFGREVGTREVISPLKRRRLGHPDSTG 202


>07_03_1160 - 24430240-24431268
          Length = 342

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -1

Query: 552 PVLPPLSGXITVAAPERPXAGXX*XXKPEEXPIRQPPFPAXWPIX*XQXKPPXPXPE 382
           P  PPL    T   P  P        KP+  P+ +P  P   P+     +PP P P+
Sbjct: 61  PNQPPLQP--TPGVPPLPNPDVPPMNKPDVPPMPKPDGPPIPPVQPCPDQPPQPKPD 115


>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
          Length = 1054

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +2

Query: 380 GSGXGXGGFXWX*XIGQXAGKGGWRMGXSSGFXXH 484
           G G G GG       G   G+  WR G SSG+  H
Sbjct: 20  GGGLGTGGNGGGGGGGSANGRRRWRGGGSSGYRQH 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,233,499
Number of Sequences: 37544
Number of extensions: 158180
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)