Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_E22
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    91   2e-19
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    26   7.8  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
 Frame = +1

Query: 208 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 387
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 388 F-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPS 552
           F       + FDSY++P  +++    R L+VD               T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 553 LGVKVDANPGRLXQTNFFINRPGIFF 630
           LG+K D  P RL Q +  I+R G+F+
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFY 214



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +2

Query: 596 QTSLLIDLE-FFFGQCSEICGANHSFIPIVIESISSKTLL 712
           Q SL ID E  F+GQCSE+CG  HS +PIV++ +S +  L
Sbjct: 202 QVSLSIDREGLFYGQCSELCGVLHSSMPIVVQGVSLEDFL 241


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 565 VDANPGRLXQTNFFINRPGIFFWSMFRNLWS 657
           + +NP    Q  F  N   I+FW   R +W+
Sbjct: 225 LSSNPTANGQVFFITNGQVIYFWDFARAIWA 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,331
Number of Sequences: 5004
Number of extensions: 36239
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)