Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_E14
(1009 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0018 - 12490940-12491195,12491575-12491775,12492174-124924... 34 0.16
04_04_0247 + 23888251-23888551,23889804-23890186 31 1.5
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780... 31 1.9
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381... 31 1.9
05_06_0086 - 25447063-25447182,25448082-25448702 29 4.4
03_04_0155 - 17773121-17773576,17773744-17774322 29 4.4
07_03_0604 + 19903654-19904598 29 5.9
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612... 29 7.8
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 29 7.8
>07_03_0018 -
12490940-12491195,12491575-12491775,12492174-12492403,
12492624-12492744,12492823-12492972,12493106-12493314,
12494120-12494234,12494346-12494440,12494523-12494758,
12496182-12496338
Length = 589
Score = 34.3 bits (75), Expect = 0.16
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +1
Query: 67 CGVRRARRSSAHIALRTGAGERGASDAGRRERAARTAVPSR 189
CG+RRA +A T G +GA DAG E+AAR+A S+
Sbjct: 33 CGLRRAAALGWRVAAVTTTGVQGAKDAG-LEKAARSASQSK 72
>04_04_0247 + 23888251-23888551,23889804-23890186
Length = 227
Score = 31.1 bits (67), Expect = 1.5
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = +1
Query: 79 RARRSSAHIALRTGAGERGASDAGRRERAARTAVPSRDRLAAAARTRSGFLVSRLV 246
RA R +A A RTGAG+ A RA TA RLAAAA + +G +R +
Sbjct: 19 RAARLAAASASRTGAGDPSA-------RATATAASRAARLAAAAASHAGGPTARAI 67
>11_06_0632 +
25674807-25675477,25676472-25677861,25677948-25678083,
25678185-25678282,25678470-25678535,25678699-25678827,
25679570-25679746,25680576-25680614
Length = 901
Score = 30.7 bits (66), Expect = 1.9
Identities = 19/48 (39%), Positives = 32/48 (66%)
Frame = +1
Query: 76 RRARRSSAHIALRTGAGERGASDAGRRERAARTAVPSRDRLAAAARTR 219
+RA+R++ A + A ER A++A +E+AAR A +R+R A+ A+ R
Sbjct: 567 QRAQRAAVQRAQQE-ARERAAAEA--KEKAARIAAEARERAASEAKER 611
>07_03_1316 +
25736931-25737206,25737276-25737329,25738036-25738189,
25740235-25740313,25740413-25740492,25740588-25740654,
25741548-25741619,25742071-25742223,25742309-25742392,
25742811-25742877
Length = 361
Score = 30.7 bits (66), Expect = 1.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 49 PGLPESC--GVRRARRSSAHIALRTGAGERGASDAGRRERAARTAVPSRDRLAAAA 210
P P C G RR+R ++A + + AG RG DAG + A + AAAA
Sbjct: 22 PASPARCFAGARRSRCAAASASFFSPAGGRGGGDAGAGSSLSSAAAAAALGEAAAA 77
>05_06_0086 - 25447063-25447182,25448082-25448702
Length = 246
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 171 ASGSLSSTGVAGPAFTGAGAQGDVRTRSPCA 79
A+ + +GVAGP AGA G+ SPCA
Sbjct: 76 AADAWGGSGVAGPCAEAAGAWGNGGVVSPCA 106
>03_04_0155 - 17773121-17773576,17773744-17774322
Length = 344
Score = 29.5 bits (63), Expect = 4.4
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = +1
Query: 82 ARRSSAHIALRTGAGERGASDAGRRERAARTAVPSRDRLAAAARTRSGFLVSRLVLVGR 258
ARR+ A +R G G + G RE A R + R RSG RL+L GR
Sbjct: 22 ARRAKA--VVRRGGGRVAGTSGGGREAARRGGAAAAVRQGGRVLGRSGGEEDRLLLHGR 78
>07_03_0604 + 19903654-19904598
Length = 314
Score = 29.1 bits (62), Expect = 5.9
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 76 RRARRSSAHIALRTGA---GERGASDAGRRERAARTAVPSRDRLA 201
RR RR H+A+R+ G RG GRR R A R R A
Sbjct: 104 RRVRRRRVHVAVRSSRRRHGRRGEEGQGRRPRVPAGAQLRRRRRA 148
>01_05_0736 -
24760576-24760690,24760885-24761108,24761188-24761248,
24761909-24763992
Length = 827
Score = 28.7 bits (61), Expect = 7.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 47 DLACPRAVECGAQGDRVRTSPCAP 118
D+ C R EC + R SPC+P
Sbjct: 372 DILCERDAECQVEPSDARVSPCSP 395
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 28.7 bits (61), Expect = 7.8
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +1
Query: 82 ARRSSAHIALRTGAGERGASDAGRRERAARTAVPSRDRLAAAARTRS 222
AR +A A A ER A +A RERAA+ A +R+R A AR ++
Sbjct: 619 ARERAAKAAAE--AKERVAEEA--RERAAKAAAEARERAATEAREKA 661
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,643
Number of Sequences: 37544
Number of extensions: 162491
Number of successful extensions: 1088
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2963829220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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