Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_E13
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.55 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.72 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   6.7  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   8.9  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 808 RGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXG 701
           RG       G  GG G    G+GG  G G GGA  G
Sbjct: 11  RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = -2

Query: 805 GRGPXXXXGXXGGXGXPXXG-QGGXXGXGXGGASXGEXPGXPXXP 674
           G GP    G  GG G    G  GG  G G G    G  PG    P
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -2

Query: 799 GPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPG 689
           GP    G  GG G    G GG  G   GG      PG
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 430 NGRAPXTPTAFPRALADSLMQKKPXTPPP 344
           NG+    P+ + R L DS ++ +P  PPP
Sbjct: 183 NGKEGIFPSNYVRLLEDSAVKAQPPPPPP 211


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 729 PXSPPCPFXGXPXPPFXPXXXXGPLP 806
           P  PP P  G P PP  P    G  P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGP 775


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = -2

Query: 844 PGTTXXXXPNXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPG 689
           P T     P   R  GP    G  G  G     +GG  G   GG   G   G
Sbjct: 119 PKTVGPKKPKGARN-GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGG 169


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 772 GGXGXPXXGQGGXXGXGXGGA 710
           G  G P  G GG  G G GGA
Sbjct: 80  GAEGGPGAGFGGFPGAGPGGA 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,054
Number of Sequences: 5004
Number of extensions: 17082
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)