Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_E13
(947 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 34 0.13
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 32 0.69
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 31 1.6
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 1.6
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 30 2.1
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 30 2.1
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.8
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 30 2.8
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 2.8
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 29 3.7
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 29 3.7
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 4.9
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 4.9
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 4.9
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 6.4
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 29 6.4
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 29 6.4
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 8.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 28 8.5
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 8.5
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 8.5
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 28 8.5
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 28 8.5
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -2
Query: 808 RGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPGXPXXPXGF 665
RGRG G GG G G+GG G GG G+ G GF
Sbjct: 153 RGRGGRGRGGDRGGRGSDRGGRGGFGRGGGGGFRGGDRGGFGGGRGGF 200
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 31.9 bits (69), Expect = 0.69
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -2
Query: 844 PGTTXXXXPNXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXG 701
P + PN GP G GG G G GG G G G S G
Sbjct: 766 PPSDFIDIPNDPTLGGPTGSSGGGGGGGNGGSGGGGGGGGGGSGGSGG 813
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -2
Query: 817 NXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPG 689
N G G G GG G G GG G G GGA G G
Sbjct: 817 NSNSGGGGGNGGGGNGGGGN---GNGGGAGDGNGGAGAGNGNG 856
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 805 GRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXP 692
G G GG G P GQGG G G G G P
Sbjct: 185 GHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPGGMLP 222
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = -2
Query: 802 RGPXXXXGXX---GGXGXPXX--GQGGXXGXGX-GGASXGEX-PGXPXXPXG 668
RGP G GG G P GQGG G G GG G+ PG P P G
Sbjct: 165 RGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGG 216
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 805 GRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXP 692
G G GG G P GQGG G G G G P
Sbjct: 465 GHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPGGMLP 502
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = -2
Query: 802 RGPXXXXGXX---GGXGXPXX--GQGGXXGXGX-GGASXGEX-PGXPXXPXG 668
RGP G GG G P GQGG G G GG G+ PG P P G
Sbjct: 445 RGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGG 496
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 817 NXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPG 689
N G G G GG G G GG G G GG G G
Sbjct: 84 NGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGG 126
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 817 NXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPG 689
N GRG G G G G GG G G GG G G
Sbjct: 89 NGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGG 131
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -2
Query: 820 PNXTRG-RGPXXXXGXXGGXGXP-XXGQGGXXGXGXGGASXGEXPGXPXXP 674
PN G RGP G GG G P GQ G G + G+ PG P P
Sbjct: 229 PNGQPGPRGPPGQAGSPGGNGQPGGPGQPGQRGSDGQPGNDGQ-PGAPGQP 278
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 805 GRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPGXPXXPXG 668
G G G GG P GG G G GG G P P G
Sbjct: 35 GGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCG 80
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 805 GRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPGXPXXPXG 668
G G G GG P GG G G GG G P P G
Sbjct: 35 GGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCG 80
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = -2
Query: 805 GRGPXXXXGXXGGX-GXPXXGQGGXXGXGXGGASXGEXPGXPXXPXG 668
GRG G GG G G+GG G GG G G P G
Sbjct: 121 GRGGTGGFGDNGGGRGGNGGGRGGNGGGNNGGGRGGNGGGRPQISAG 167
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 729 PXSPPCPFXGXPXPPFXPXXXXGPLP 806
P PPCP P PP P P+P
Sbjct: 55 PPPPPCPAQFCPPPPICPPPPPPPMP 80
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -2
Query: 817 NXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPG 689
N G G G GG G G GG G G GGA G G
Sbjct: 794 NSNSGGGGGNGGGGNGGGGN---GNGGGAGDGNGGAGAGNGNG 833
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -2
Query: 817 NXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPG 689
N G G G GG G G GG G G GGA G G
Sbjct: 447 NSNSGGGGGNGGGGNGGGGN---GNGGGAGDGNGGAGAGNGNG 486
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 802 RGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXG 701
RG G GG G G+GG G G GG G
Sbjct: 21 RGGYGGGGRGGGGGGYSGGRGGGYGGGGGGGYGG 54
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = -2
Query: 802 RGPXXXXGXXGGXGXPXXGQ-GGXXGXGXGGASXGEXPGXPXXPXG 668
RGP G G G P GQ G G G GAS G G P G
Sbjct: 145 RGPPGQAGLDGLPGAP--GQPGSNGGAGSNGASEGSAGGCKTCPAG 188
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = -2
Query: 844 PGTTXXXXPNXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPGXPXXPXG 668
PGT P GP G G G Q G G + G+ PG P P G
Sbjct: 240 PGTNTVNSPGGPGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGPPGNDGQ-PGGPGQPGG 297
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 808 RGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPG 689
RGRG G GG G G G G G GG+ G G
Sbjct: 823 RGRGGGVFGG--GGRGGDFGGSGNFGGSGGGGSFGGSGGG 860
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = -2
Query: 817 NXTRGRGPXXXXGXXGGXGXP-XXGQGGXXG-XGXGGASXGEXP-GXPXXP 674
N RGRG G G G P GQ G G G GA P G P P
Sbjct: 197 NGRRGRGTPGAPGAPGAAGAPGNNGQPGQDGAPGQAGAPGASGPDGQPGQP 247
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -2
Query: 844 PGTTXXXXPNXTRG-RGPXXXXGXXGGXGXP-XXGQGGXXGXGXGGASXGEXPGXPXXP 674
PG PN T G +GP G G G G+ G G G S GE PG P P
Sbjct: 161 PGPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGPPGENGRNGEPQPG-SPGE-PGRPGQP 217
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = -2
Query: 808 RGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPGXP 683
RGR P G G P GG G GG G+ G P
Sbjct: 62 RGRSPGGFRGDREGGFSPRGRGGGFRGGDRGGFRGGDRGGSP 103
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = -2
Query: 820 PNXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEX-PGXPXXPXGFXH 659
P G G GG G P G G G G G G PG P P G H
Sbjct: 100 PGGPGNPGGPGGLGTPGGPGTPG-GPGNPGGLGGPGNPGGPGTPGGPGTPGGQPH 153
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -2
Query: 772 GGXGXPXXGQGGXXGXGXGGASXGEXPGXPXXP 674
GG G P G G G G GG P P P
Sbjct: 616 GGPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKP 648
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 805 GRGPXXXXGXXGGXGXPXXGQGGXXGXGXGG 713
GRGP G G G+GG G G GG
Sbjct: 145 GRGPPGSNGGGDWGGNGGGGRGGGGGRGGGG 175
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -2
Query: 844 PGTTXXXXPNXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPGXPXXPXGF 665
P TT T G G G GG G G G G AS E G P GF
Sbjct: 395 PSTTDSSSGQQTAGFGGASKPGF-GGDSSTGFGSGLKAGFGGHRASTAENSGLPTETTGF 453
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -2
Query: 772 GGXGXPXXGQGGXXGXGXGGASXGEXPGXPXXP 674
GG G P G G G G GG P P P
Sbjct: 616 GGPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKP 648
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -2
Query: 844 PGTTXXXXPNXTRGRGPXXXXGXXGGXGXPXXGQGGXXGXGXGGASXGEXPGXPXXPXGF 665
P TT T G G G GG G G G G AS E G P GF
Sbjct: 395 PSTTDSSSGQQTAGFGGASKPGF-GGDSSTGFGSGLKAGFGGHRASTAENSGLPTETTGF 453
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 781 GXXGGXGXPXXGQGGXXGXGXGGASXGEXPG 689
G GG G G GG G G GG G G
Sbjct: 168 GGMGGGGYGGGGDGGYGGGGFGGGGMGGYGG 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,518,204
Number of Sequences: 27780
Number of extensions: 127701
Number of successful extensions: 511
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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