Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_E08
(922 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.88
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.88
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.88
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 30 2.0
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 30 2.7
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 30 2.7
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 30 2.7
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 3.5
U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical pr... 29 4.7
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 29 4.7
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 4.7
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 29 6.2
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 6.2
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.2
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 8.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.2
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 28 8.2
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 28 8.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.2
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.88
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +3
Query: 672 PKXPPPPXXXSKXSPPXXXXXXTPXXXFKXSXXFPPXKXXPXPPPXXPP 818
P PPP K SPP P S PP P PPP P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPP-PPRTGSPPPPPTGSP 280
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.88
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +3
Query: 672 PKXPPPPXXXSKXSPPXXXXXXTPXXXFKXSXXFPPXKXXPXPPPXXPP 818
P PPP K SPP P S PP P PPP P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPP-PPRTGSPPPPPTGSP 301
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.88
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +3
Query: 672 PKXPPPPXXXSKXSPPXXXXXXTPXXXFKXSXXFPPXKXXPXPPPXXPP 818
P PPP K SPP P S PP P PPP P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPP-PPRTGSPPPPPTGSP 286
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/61 (27%), Positives = 22/61 (36%)
Frame = -1
Query: 853 KRGXRXXXXXXRGGXKGGGXGXXXXGGXXXEXLKXXXGVXXXXXWGGXFFEXXXGGGGXX 674
++G + GG GGG G GG G+ GG + GGGG
Sbjct: 112 RKGKKEQDNYGGGGNYGGGGGNQGGGGGGGFNFNDIGGLINSMGGGGGGGQRQGGGGGGF 171
Query: 673 G 671
G
Sbjct: 172 G 172
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -3
Query: 818 GWXXGGGXXGGFXGGKXXGXFKXPXGGXPXXXXGGXXF*XXXRGGGXF 675
G+ GGG GG GG G K G GG F GG F
Sbjct: 17 GFGSGGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSGF 64
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -3
Query: 818 GWXXGGGXXGGFXGGKXXGXFKXPXGGXPXXXXGGXXF*XXXRGGGXF 675
G+ GGG GG GG G K G GG F GG F
Sbjct: 17 GFGSGGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSGF 64
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -3
Query: 818 GWXXGGGXXGGFXGGKXXGXFKXPXGGXPXXXXGGXXF*XXXRGGGXF 675
G+ GGG GG GG G K G GG F GG F
Sbjct: 17 GFGSGGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSGF 64
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Frame = +3
Query: 642 PXXGXVXGLXPKXPPPPXXXSKX---SPPXXXXXXTPXXXFKXSXXFPPXKXXPXPPPXX 812
P G P PPPP SPP TP + PP P PP
Sbjct: 128 PRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPP-SPEPRNPPRT 186
Query: 813 PP 818
PP
Sbjct: 187 PP 188
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -3
Query: 818 GWXXGGGXXGGFXGGKXXGXFKXPXGGXPXXXXGGXXF*XXXRGGG 681
GW GGG GG GG G G GG RGGG
Sbjct: 56 GWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNG--GGGRGGG 99
>U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical
protein F12A10.1 protein.
Length = 120
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 818 GWXXGGGXXGGFXGGKXXGXFKXPXGGXPXXXXGG 714
GW GGG GG+ GG G + GG P GG
Sbjct: 58 GW--GGGYPGGYGGG-YPGGYSGYGGGYPGMYGGG 89
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -1
Query: 817 GGXKGGGXGXXXXGGXXXEXLKXXXGVXXXXXWGGXFFEXXXGGGGXXG 671
GG GGG G GG G+ GG + GGGG G
Sbjct: 78 GGNYGGGGGNQGGGGGGGFNFNDIGGLINSMGGGGGGGQRQGGGGGGFG 126
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -1
Query: 817 GGXKGGGXGXXXXGGXXXEXLKXXXGVXXXXXWGGXFFEXXXGGGGXXG 671
GG GGG G GG G+ GG + GGGG G
Sbjct: 103 GGNYGGGGGNQGGGGGGGFNFNDIGGLINSMGGGGGGGQRQGGGGGGFG 151
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 806 GGGXXGGFXGGKXXGXFKXPXGGXPXXXXGGXXF*XXXRGG 684
GGG GGF GG+ G GG GG RGG
Sbjct: 47 GGGDRGGFRGGRGGGDRGGFRGGRGGGDRGGFGGRGSPRGG 87
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = -1
Query: 817 GGXKGGGXGXXXXGGXXXEXL-KXXXGVXXXXXWGGXFFEXXXGGGGXXGKXPXTXPFXG 641
GG GGG G GG + G+ GG GGGG G P G
Sbjct: 173 GGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGG 232
Query: 640 FXPFXG 623
+ P G
Sbjct: 233 YGPGGG 238
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Frame = +1
Query: 682 PPPLXXLQKXXP---PXXXXGXPPXGLLXIPXXFPPXXPPXXPPPXXHPXXXXXXTXXP 849
PPP+ P P PP ++ P PP PP PPP P T P
Sbjct: 327 PPPMKLDPSPQPAATPVEITEIPP--IISPPAPPPPPPPPPPPPPPQTPSASSSVTFSP 383
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = +3
Query: 642 PXXGXVXGLXPKXPPPPXXXSKXSPPXXXXXXTPXXXFKXSXXFPPXKXXPXPP 803
P G+ P+ PPPP PP TP PP PP
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 328
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +3
Query: 663 GLXPKXPPPPXXXSKXSPPXXXXXXTPXXXFKXSXXFPPXKXXPXPPPXXPP 818
G P PPPP + P P PP P PP PP
Sbjct: 26 GPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPP 77
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +3
Query: 672 PKXPPPPXXXSKXSPPXXXXXXTPXXXFKXSXXFPPXKXXPXPPPXXPPL 821
P PPPP +PP P + PP P PPP PP+
Sbjct: 28 PPCPPPPPPMC--APPPLPCPPPPICPPQFCP--PPPMCPPPPPPPPPPM 73
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +3
Query: 714 PPXXXXXXTPXXXFKXSXXFPPXKXXPXPPPXXPPL 821
PP P S PP P PPP PP+
Sbjct: 687 PPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPI 722
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = +1
Query: 682 PPPLXXLQKXXPPXXXXGXPPXGLLXIPXXFPPXXPPXXPPP--XXHPXXXXXXTXXPFX 855
PP L + PP PP GL I PP PP PP P P
Sbjct: 716 PPGLPPITGGPPPPP----PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 856 PXXGXXGXFS*XPP 897
P G F PP
Sbjct: 772 PPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +3
Query: 714 PPXXXXXXTPXXXFKXSXXFPPXKXXPXPPPXXPPL 821
PP P S PP P PPP PP+
Sbjct: 687 PPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPI 722
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = +1
Query: 682 PPPLXXLQKXXPPXXXXGXPPXGLLXIPXXFPPXXPPXXPPP--XXHPXXXXXXTXXPFX 855
PP L + PP PP GL I PP PP PP P P
Sbjct: 716 PPGLPPITGGPPPPP----PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 856 PXXGXXGXFS*XPP 897
P G F PP
Sbjct: 772 PPPPPPGGFKGGPP 785
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = +3
Query: 642 PXXGXVXGLXPKXPPPPXXXSKXSPPXXXXXXTPXXXFKXSXXFPPXKXXPXPP 803
P G+ P+ PPPP PP TP PP PP
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 338
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +3
Query: 681 PPPPXXXSKXS--PPXXXXXXTPXXXFKXSXXFPPXKXXPXPPP 806
PPPP SK S P P F S P P PPP
Sbjct: 269 PPPPRIASKTSVAPTSSRAPLPPSSSFAPSISASPAPAPPPPPP 312
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +3
Query: 681 PPPPXXXSKXS--PPXXXXXXTPXXXFKXSXXFPPXKXXPXPPP 806
PPPP SK S P P F S P P PPP
Sbjct: 271 PPPPRIASKTSVAPTSSRAPLPPSSSFAPSISASPAPAPPPPPP 314
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +3
Query: 714 PPXXXXXXTPXXXFKXSXXFPPXKXXPXPPPXXPPL 821
PP P S PP P PPP PP+
Sbjct: 270 PPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPI 305
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = +1
Query: 682 PPPLXXLQKXXPPXXXXGXPPXGLLXIPXXFPPXXPPXXPPP--XXHPXXXXXXTXXPFX 855
PP L + PP PP GL I PP PP PP P P
Sbjct: 299 PPGLPPITGGPPPPP----PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Query: 856 PXXGXXGXFS*XPP 897
P G F PP
Sbjct: 355 PPPPPPGGFKGGPP 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,625,906
Number of Sequences: 27780
Number of extensions: 205768
Number of successful extensions: 1066
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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