Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_E04
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.7  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    26   8.3  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    26   8.3  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -1

Query: 428 TITCGQTLCRKESSNIFITKSSAE-STSRLI----SQPTEKIQREIQWVMCLK 285
           T+ CG T+CRK   N + ++SS + S SR       +P   ++ E++ V+  K
Sbjct: 31  TLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYNHKKPHYSVETEVKDVIISK 83


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 405 EGLPTSYGEARIAYQGYW*IDRKKKQPH 488
           EG+ T YGEA   Y GYW  D  +  PH
Sbjct: 86  EGV-TGYGEA---YHGYWAEDLTQLNPH 109


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 348 RGRFSTAFGNEDVRRFFPAEGLP 416
           RGRF   + N  ++ +F A G+P
Sbjct: 293 RGRFGNWWANSGLKAYFDAHGIP 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,484
Number of Sequences: 5004
Number of extensions: 49544
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)