Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_E03
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    33   0.072
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    27   2.7  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    26   6.3  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   8.3  
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   8.3  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   8.3  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   8.3  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 387 NDFLNRCLFFTAHHIFFMLFYHLIGGSFD--NSFLDFAIYS 271
           +  LNRC   +   +F +  YH + G+F    S+L FAI+S
Sbjct: 421 SSLLNRCTLSSIQAVFLLSLYHFLTGNFKCAYSYLGFAIHS 461


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 631 KAECTTTSNLLGCLHVGSKYALPSV-KVIIVIFRHGHFGDRNIFLQYSDFCAFSSDYLIR 455
           +A  +  +NL   ++ G  +  P+  K+ + IF HG  G RN+   YS  C   + Y I 
Sbjct: 89  RAFASGLTNLALPVYKGELFHPPNNGKLPVFIFSHGLVGSRNV---YSSLCGTIASYGIV 145

Query: 454 IFFVE 440
           +  +E
Sbjct: 146 VLAME 150


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 247 NCLIIDSITINCKIKKRVIKRTSNQMVEKHKENVMRSKK*TPIKEII 387
           +CLI+   +      KR+IK  SN  V K K NV+      P K+ +
Sbjct: 267 DCLIVAGTSCKIPGVKRIIKEMSN-CVHKQKGNVIWLNYDEPTKDFL 312


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 325 VEKHKENVMRSKK*TPIKEIIFVVIDSLEYDH-LHSTNGSRQKKYELSNHWK 477
           +  +KE ++++K    +K +IF  I +L Y   L + N  ++  +E+  H+K
Sbjct: 1   MNSYKEEILQTKSDFTLKNLIFFAISTLCYKRALFNENCYKKVNFEI-EHFK 51


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +1

Query: 325 VEKHKENVMRSKK*TPIKEIIFVVIDSLEYDHLHSTNGSRQKKYELSNHWKMRKNRNTVK 504
           V+K K N+  ++     +E I   ++S++     S    + + Y  SNH  M  +RN  +
Sbjct: 132 VQKPKVNISHAEA----EEDIDSFLESMDQSAPPSITEDKGENYISSNHSSMHISRNDSR 187

Query: 505 KYYDHQNDHDE 537
            Y   + + D+
Sbjct: 188 NYMSEKPNKDQ 198


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 299 LSKEPPIKW*KSIKKM*CAVKNKHRLRK 382
           L +EP IKW KS +   C   +K + R+
Sbjct: 304 LPQEPGIKWSKSFQHFLCVCLDKDKTRR 331


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 313 SNQMVEKHKENVMRSKK*----TPIKEIIFVVIDSLEYDHLHSTNGS 441
           ++Q  ++H E    S+K     TP K +   VIDS    H+HS + S
Sbjct: 114 NSQNAQRHHEPSFNSEKASYTSTPYKNVAPKVIDSPSARHMHSNSPS 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,741
Number of Sequences: 5004
Number of extensions: 57709
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)