Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_E03
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   8.6  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 394 VIDSLEYDHLHSTNGSRQKKYELSNHWKMRKNRNTVKKYYD 516
           +I SL  ++ +S   +    Y   N++    N N  K YY+
Sbjct: 314 IISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYN 354


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 370 PIKEIIFVVIDSLEYDHLHSTNG 438
           PIK+I +  + SL   HL   NG
Sbjct: 298 PIKDIDYENVQSLYQPHLRGLNG 320


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 442 EIHW*SAGGHILSCQLLQK*FP*SVFI 362
           E  W S   HI   Q LQK  P S+ +
Sbjct: 153 EASWHSPEAHISVAQKLQKEIPNSIIL 179


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 689 HYPSGFKVLNKLRNICIVFQS 627
           H P G  VL ++   CIVF S
Sbjct: 200 HLPIGASVLFEIFPFCIVFGS 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,814
Number of Sequences: 438
Number of extensions: 4157
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)