Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_E01
         (945 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X64624-1|CAA45907.1|  331|Homo sapiens RDC-1 protein.                  32   3.5  
U10063-1|AAA57161.1|  423|Homo sapiens POU domain factor protein.      31   4.6  
L20433-1|AAA65605.1|  420|Homo sapiens octamer binding transcrip...    31   4.6  

>X64624-1|CAA45907.1|  331|Homo sapiens RDC-1 protein.
          Length = 331

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -2

Query: 773 GWXXGGGXXGGGXGGKXXGKGKXPXGG 693
           G   GGG  GGG GG   G G  P GG
Sbjct: 70  GGGPGGGGPGGGGGGAAGGGGGGPGGG 96


>U10063-1|AAA57161.1|  423|Homo sapiens POU domain factor protein.
          Length = 423

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -2

Query: 773 GWXXGGGXXGGGXGGKXXGKGKXPXGG 693
           G   GGG  GGG GG   G G  P GG
Sbjct: 159 GGGPGGGGPGGGGGGGPGGGGGGPGGG 185


>L20433-1|AAA65605.1|  420|Homo sapiens octamer binding
           transcription factor 1 protein.
          Length = 420

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -2

Query: 773 GWXXGGGXXGGGXGGKXXGKGKXPXGG 693
           G   GGG  GGG GG   G G  P GG
Sbjct: 156 GGGPGGGGPGGGGGGGPGGGGGGPGGG 182


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,845,607
Number of Sequences: 237096
Number of extensions: 716434
Number of successful extensions: 9432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6768
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12436574528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)