Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D21
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   2.0  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   8.1  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 25/80 (31%), Positives = 38/80 (47%)
 Frame = -1

Query: 555 VNRCFPFFKXFSMTSGRVSINSVIGPAVCCSDMLTTCHIRFCDATSFNFSLANISFNS*A 376
           +N C  F+K FS+T  R+ I   I PA   S  L    +         F L+ +S  S  
Sbjct: 633 LNNCLKFYKAFSLTK-RLEITMPI-PASDYSH-LELRSLLLARIFQCFFELSQLSGMSLD 689

Query: 375 SRDLAMCLVSTLATLAAVIG 316
            ++L    VST+A L+++ G
Sbjct: 690 DQELLSTTVSTIAELSSLQG 709


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 70  HFQFWVQIIIKFV*NYLIYVVAKYLHLSITLMKVEQNEEFKQVKRPSNDNSSDASSTMLC 249
           H  + + +  K V +YL+Y      HLS+T +      E +   RP  D  + +   + C
Sbjct: 387 HLSYCIGLTAKSV-SYLMYNCKTLKHLSVTGINSILCTELRSFSRPIPDGINPSQVPVFC 445

Query: 250 DCT 258
             T
Sbjct: 446 AFT 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,092
Number of Sequences: 5004
Number of extensions: 56088
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)