Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D18
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   0.93 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   0.93 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          24   1.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.7  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 201 AGIHRQKSLRPSWW 160
           AGIHR+K L   WW
Sbjct: 59  AGIHRKKVLLSVWW 72


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 201 AGIHRQKSLRPSWW 160
           AGIHR+K L   WW
Sbjct: 181 AGIHRKKVLLSVWW 194


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 201 AGIHRQKSLRPSWW 160
           AGIHR+K L   WW
Sbjct: 60  AGIHRKKVLLLVWW 73


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 404 SHDFNYVLYNLTIPYRNMLIN 342
           ++ +NY  YN  + Y+N +IN
Sbjct: 328 NYKYNYNNYNKKLYYKNYIIN 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,942
Number of Sequences: 438
Number of extensions: 3445
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)