Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D16
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    69   7e-13
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   6.1  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 69.3 bits (162), Expect = 7e-13
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 6/185 (3%)
 Frame = +2

Query: 161 SVEDLHKXLDSFDHVLSDCDGVIWTQDS-LPRVGEXFKQMKKRGKTVNXVSNNSLRSRAN 337
           S ++  + +D FD  L DCDGV+W+    +P V +  K ++  GK +  VSNNS +SR  
Sbjct: 7   SPKEYKEFIDKFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFVSNNSTKSRET 66

Query: 338 YEAQFKAASIDNGFESLIIPSIAVAEYLKSV---TFNKTVYCVTCTETKRVLEAHGFKCK 508
           Y  +     I    E +   + + A Y+K V     +K V+ +     +  L+  G    
Sbjct: 67  YMNKINEHGIAAKLEEIYPSAYSSATYVKKVLKLPADKKVFVLGEAGIEDELDRVGVAHI 126

Query: 509 EG--PDLGPEYYGEYIQYLEDDEEIGAVVFDSDFKINLPKMYRAITYLKRPEVLFINGAT 682
            G  P L      E ++ +  D  +GAV+   D  +   K   A  YL+ P   F+    
Sbjct: 127 GGTDPSLRRALASEDVEKIGPDPSVGAVLCGMDMHVTYLKYCMAFQYLQDPNCAFLLTNQ 186

Query: 683 DRMVP 697
           D   P
Sbjct: 187 DSTFP 191


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 641 YLKRPEVLFINGATDRMVPMKTGL 712
           +LKR  + F+NG  D ++PM  GL
Sbjct: 359 FLKRLALRFLNGERDLVLPMYRGL 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,169
Number of Sequences: 5004
Number of extensions: 65899
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)