Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_D16
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039... 79 6e-15
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448... 72 5e-13
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 47 2e-05
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318... 32 0.52
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522... 31 1.6
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 29 6.5
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 28 8.5
>04_04_0337 -
24503417-24503523,24503612-24503715,24503828-24503927,
24504009-24504106,24504403-24504455,24504508-24504588,
24504668-24504739,24504882-24504953,24505045-24505137,
24505240-24505307,24505388-24505658
Length = 372
Score = 78.6 bits (185), Expect = 6e-15
Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 12/187 (6%)
Frame = +2
Query: 164 VEDLHKXLDSFDHVLSDCDGVIWTQDSL-PRVGEXFKQMKKRGKTVNXVSNNSLRSRANY 340
+E+ +DS + + DCDGVIW D L V E ++ +GK + V+NNS +SR Y
Sbjct: 72 LENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQY 131
Query: 341 EAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NKTVYCVTCTETKRVLEAHGFKCKEG 514
+F+ ++ E + S A A YL+S+ F +K VY + + LE GF+ G
Sbjct: 132 GKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGG 191
Query: 515 PDLGPEYY----GEYIQYLEDDEEI----GAVVFDSDFKINLPKM-YRAITYLKRPEVLF 667
P G + G Y+++ +D I GAVV D N K+ Y + + P LF
Sbjct: 192 PSDGDKKIELKPGFYMEHDKDVTTIPTLVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLF 251
Query: 668 INGATDR 688
I AT+R
Sbjct: 252 I--ATNR 256
>09_02_0119 -
4481522-4481580,4481615-4481718,4483132-4483231,
4483307-4483404,4483688-4483828,4485736-4485788,
4486578-4486649,4487730-4487801,4487895-4487987,
4489040-4489107,4489268-4489358
Length = 316
Score = 72.1 bits (169), Expect = 5e-13
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Frame = +2
Query: 158 LSVEDLHKXLDSFDHVLSDCDGVIWTQDSLPR-VGEXFKQMKKRGKTVNXVSNNSLRSRA 334
L+ + +DS D L DCDGVIW D L V E ++K GK + V+NNS +SR
Sbjct: 10 LTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSRR 69
Query: 335 NYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTFN--KTVYCVTCTETKRVLEAHGFKCK 508
Y +F+A ++ E + S A A +LK F+ K VY V L GF+C
Sbjct: 70 QYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFECL 129
Query: 509 EGP 517
GP
Sbjct: 130 GGP 132
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 47.2 bits (107), Expect = 2e-05
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Frame = +2
Query: 269 KQMKKRGKTVNXVSNNSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NK 442
+ + +GK + V+NNS +SR Y +F+ ++ E + S A YL+S+ F +K
Sbjct: 58 RHARSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDK 117
Query: 443 TVYCVTCTETKRVLEAHGFKCKEGPDLGPEYYG-EYIQYLEDDEEIGAV 586
VY + + LE GF+ GP G + + Y+E D+++ +
Sbjct: 118 KVYVIGEDGILKELELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVTTI 166
>08_02_1186 +
25027498-25029854,25029953-25030564,25031742-25031847,
25032669-25033199
Length = 1201
Score = 32.3 bits (70), Expect = 0.52
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Frame = +2
Query: 389 IIPSIAVAEYLKSVTFNKTVYCVTCT--ETKRVLEAHGFKCKEGPDLGPEYYGEYIQYLE 562
++PS+ Y + F++T+Y + C+ ++KRV++ K E L E + + E
Sbjct: 24 VLPSMK--PYPPELRFDRTIY-IDCSRWKSKRVMQR---KIAEELKLDNETMASFDKQDE 77
Query: 563 DDEEIGAVVFDSDFKINLPKMYRAITYLKRPEVLFINGATDRMVPMKT 706
+D+ G + D +N+ I R ++F+NG+ D +P+ T
Sbjct: 78 EDDFSGVDICSRDAILNVSAAISRILSQSRFLMVFLNGSDDE-IPLST 124
>12_02_1096 +
26050224-26051058,26051599-26051831,26051940-26052230,
26052860-26052988,26053082-26053255,26053334-26053547,
26053881-26053968,26054195-26054239,26056969-26057015,
26057441-26057727,26057812-26058051,26058141-26058257
Length = 899
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 849 KDXTGIGDAGSL--HSEFTETLPGFPSSTALVSLLX*PDL*NSRP*PXRP--VFMGTILS 682
+D TG+ G + HS + +LP S +L +L D +RP P P VF+G I +
Sbjct: 361 EDATGLAVTGGVDVHSIYATSLPKVHPSFSLQQVLEMSDRWKARPVPEEPIQVFIGIISA 420
Query: 681 VAPFMKR 661
F +R
Sbjct: 421 TNHFAER 427
>02_05_0064 -
25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 409 HCDRWNDQALKAVVDAGCFELSFIICSGSXAVIGNXIYCL-PAFLHL 272
HC + +D+ LKAV+ GC L ++ +G + N + L + +HL
Sbjct: 141 HCRKLSDKGLKAVL-LGCQNLRQLVIAGCRLITDNLLIALSKSCIHL 186
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 527 PEYYGEYIQYLEDDEEIGAVVFDSDFKINLPK-MYRAITYLKRPEVLFINGATDRMVP 697
P +Y E + YLE + + F ++K +PK + ++ L V +N AT VP
Sbjct: 359 PNFYDETLLYLEQEWKWCLTAFPEEYKSLVPKVLVETMSELNSSFVSRVNLATGDAVP 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,009,443
Number of Sequences: 37544
Number of extensions: 420411
Number of successful extensions: 896
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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