Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D12
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597...    33   0.31 
06_01_1015 - 7940366-7941148                                           29   6.6  

>06_03_1468 -
           30354724-30354945,30359326-30359497,30359587-30359770,
           30359865-30360111,30360817-30362052
          Length = 686

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = -2

Query: 558 GPSGVGXPVSFKTFGPXADXXPXRTXXFVDXSSAKRGVGXAXXEAGGLRNFSEYTFLRVT 379
           GP G+G P+ F          P     FVD + A +           L+N  +YT L   
Sbjct: 204 GPGGLGGPMDFGRSKSKFQEVPETGVTFVDVAGADQAKLELQEVVDFLKNPDKYTALGAK 263

Query: 378 VLRGCL 361
           + +GCL
Sbjct: 264 IPKGCL 269


>06_01_1015 - 7940366-7941148
          Length = 260

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = -1

Query: 595 PLNSRYPNRXXSGPLXCXPTXIIQNFWTXRRXXXXSHXPXRRXLVGQARSWXCXXRGRRA 416
           P+N+R+  R  SG +    T I Q+FWT R          RR +VG+          R +
Sbjct: 31  PVNNRF--RIQSGMIRLGNTSIDQSFWTGRAQTL--RHQGRRVVVGEELGRRSTR--RNS 84

Query: 415 SEL*RVYLSSGDRSSRVSLA---SSGEVCLYLDRSG 317
           +   +V ++SG    RV+ A   S GE      R G
Sbjct: 85  ARRRQVNVASGAAFDRVAAAWRRSDGEASGVATRGG 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,505
Number of Sequences: 37544
Number of extensions: 212697
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)