Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D12
         (895 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ...    31   7.5  
Y11710-1|CAA72402.1|  755|Homo sapiens collagen type XIV protein.      31   7.5  
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ...    31   7.5  
D17391-1|BAA04214.1|  472|Homo sapiens alpha 4(IV) collagen prot...    31   7.5  
BC083495-1|AAH83495.1|  388|Homo sapiens COL14A1 protein protein.      31   7.5  
BC014640-1|AAH14640.1|  759|Homo sapiens COL14A1 protein protein.      31   7.5  
AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.              31   7.5  
U59736-1|AAC50869.1|  812|Homo sapiens NFATc.b protein.                30   9.9  

>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
            protein.
          Length = 1690

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = +2

Query: 530  DTGXPTPEGPRXXSVWIPGI*RCLXLXLFXRAGXXKTPXLGXXPGPPXXKTXPGXXGFP 706
            D G P P+GPR  +   PG+   + L L    G    P     PGPP     PG  GFP
Sbjct: 1262 DQGPPGPDGPRG-APGPPGLPGSVDL-LRGEPGDCGLPG---PPGPPGPPGPPGYKGFP 1315


>Y11710-1|CAA72402.1|  755|Homo sapiens collagen type XIV protein.
          Length = 755

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
 Frame = -2

Query: 726 PREXXXXGKPXKPGXVFXXGGPGXXPXXGVFXXPALXKXNXXK-HL*IPGIQTEXXRGPS 550
           P E    G P  PG     G PG     GV   P        K     PG+ T+  RGP 
Sbjct: 631 PGEPGRPGSPGAPGEQGPPGTPGFPGNAGVPGTPGERGLTGIKGEKGNPGVGTQGPRGPP 690

Query: 549 GVGXP 535
           G   P
Sbjct: 691 GPAGP 695


>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 chain
            protein.
          Length = 1690

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = +2

Query: 530  DTGXPTPEGPRXXSVWIPGI*RCLXLXLFXRAGXXKTPXLGXXPGPPXXKTXPGXXGFP 706
            D G P P+GPR  +   PG+   + L L    G    P     PGPP     PG  GFP
Sbjct: 1262 DQGPPGPDGPRG-APGPPGLPGSVDL-LRGEPGDCGLPG---PPGPPGPPGPPGYKGFP 1315


>D17391-1|BAA04214.1|  472|Homo sapiens alpha 4(IV) collagen
           protein.
          Length = 472

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = +2

Query: 530 DTGXPTPEGPRXXSVWIPGI*RCLXLXLFXRAGXXKTPXLGXXPGPPXXKTXPGXXGFP 706
           D G P P+GPR  +   PG+   + L L    G    P     PGPP     PG  GFP
Sbjct: 44  DQGPPGPDGPRG-APGPPGLPGSVDL-LRGEPGDCGLPG---PPGPPGPPGPPGYKGFP 97


>BC083495-1|AAH83495.1|  388|Homo sapiens COL14A1 protein protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
 Frame = -2

Query: 726 PREXXXXGKPXKPGXVFXXGGPGXXPXXGVFXXPALXKXNXXK-HL*IPGIQTEXXRGPS 550
           P E    G P  PG     G PG     GV   P        K     PG+ T+  RGP 
Sbjct: 248 PGEPGRPGSPGAPGEQGPPGTPGFPGNAGVPGTPGERGLTGIKGEKGNPGVGTQGPRGPP 307

Query: 549 GVGXP 535
           G   P
Sbjct: 308 GPAGP 312


>BC014640-1|AAH14640.1|  759|Homo sapiens COL14A1 protein protein.
          Length = 759

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
 Frame = -2

Query: 726 PREXXXXGKPXKPGXVFXXGGPGXXPXXGVFXXPALXKXNXXK-HL*IPGIQTEXXRGPS 550
           P E    G P  PG     G PG     GV   P        K     PG+ T+  RGP 
Sbjct: 619 PGEPGRPGSPGAPGEQGPPGTPGFPGNAGVPGTPGERGLTGIKGEKGNPGVGTQGPRGPP 678

Query: 549 GVGXP 535
           G   P
Sbjct: 679 GPAGP 683


>AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.
          Length = 1324

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = +2

Query: 530  DTGXPTPEGPRXXSVWIPGI*RCLXLXLFXRAGXXKTPXLGXXPGPPXXKTXPGXXGFP 706
            D G P P+GPR  +   PG+   + L L    G    P     PGPP     PG  GFP
Sbjct: 1262 DQGPPGPDGPRG-APGPPGLPGSVDL-LRGEPGDCGLPG---PPGPPGPPGPPGYKGFP 1315


>U59736-1|AAC50869.1|  812|Homo sapiens NFATc.b protein.
          Length = 812

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 272 GAQLQEQTPR--PSQENA*SI*IQANLAARSQRHPRRTVTRRKVYSLKFRSPPASXXAXP 445
           GA     +PR  PS     S+  ++ L ARS R P     +RK YSL  R PP S    P
Sbjct: 213 GACTLLSSPRHSPSTSPRASVTEESWLGARSSR-PASPCNKRK-YSLNGRQPPYSPHHSP 270

Query: 446 TP 451
           TP
Sbjct: 271 TP 272


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,275,551
Number of Sequences: 237096
Number of extensions: 1354287
Number of successful extensions: 3616
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3580
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)