Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D12
         (895 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein ...    29   8.6  
AY035777-1|AAK77970.1|  257|Drosophila melanogaster gag protein ...    29   8.6  
AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein ...    29   8.6  

>AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein
            protein.
          Length = 970

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 48   RTPRALLAPADAHLLIMFLKRISSKLNNNMPSTPSDEQ 161
            + P ++L PA+ HL       I+  + N+ P+ PS EQ
Sbjct: 889  KNPNSVLNPANTHLTHFCPPPITQDIPNDEPTEPSQEQ 926


>AY035777-1|AAK77970.1|  257|Drosophila melanogaster gag protein
           protein.
          Length = 257

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 48  RTPRALLAPADAHLLIMFLKRISSKLNNNMPSTPSDEQ 161
           + P ++L PA+ HL       I+  + N+ P+ PS EQ
Sbjct: 176 KNPNSVLNPANTHLTHFCPPPITQDIPNDEPTEPSQEQ 213


>AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein
            protein.
          Length = 970

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 48   RTPRALLAPADAHLLIMFLKRISSKLNNNMPSTPSDEQ 161
            + P ++L PA+ HL       I+  + N+ P+ PS EQ
Sbjct: 889  KNPNSVLNPANTHLTHFCPPPITQDIPNDEPTEPSQEQ 926


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,821,948
Number of Sequences: 53049
Number of extensions: 361771
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4341591036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)