Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D12
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.6  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   6.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 249 LAALLQTMEPNYRSRLHDLLKKMPDL 326
           L  +L    P +   L +LLKK+PDL
Sbjct: 370 LQTVLAQNHPQHPDILRELLKKIPDL 395


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 354 EAKDTLEERSPEERYTR 404
           E K  LEER+  +RY+R
Sbjct: 258 EKKKLLEERTSRKRYSR 274


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 354 EAKDTLEERSPEERYTR 404
           E +  LEER+  ERY+R
Sbjct: 258 EKEKLLEERTSRERYSR 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,694
Number of Sequences: 438
Number of extensions: 2436
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)