Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D10
         (963 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   2.6  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   4.5  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -1

Query: 687 PXXXGVFGXXGXLGPXGXPXFPXXPXVXG 601
           P   G  G  G  GP G P  P  P V G
Sbjct: 154 PGDVGPKGEPGPKGPAGHPGAPGRPGVDG 182



 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -1

Query: 687 PXXXGVFGXXGXLGPXGXPXFPXXPXVXGDP 595
           P   G  G  G LG  G P +P      G+P
Sbjct: 133 PGSLGYPGEKGDLGTPGPPGYPGDVGPKGEP 163


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 675 GVFGXXGXLGPXGXPXFPXXPXVXGDP 595
           G+ G  G +GP G P  P    V G P
Sbjct: 238 GLPGPQGEVGPRGFPGRPGEKGVPGTP 264


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.313    0.145    0.486 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 307,003
Number of Sequences: 2352
Number of extensions: 3172
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 105843456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)