Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP21_F_D10
(963 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25286-1|AAA58429.1| 1388|Homo sapiens alpha-1 type XV collagen ... 34 0.67
L25280-1|AAC78500.1| 1388|Homo sapiens type XV collagen protein. 34 0.67
AL354923-1|CAI12548.2| 1388|Homo sapiens collagen type XV alpha ... 34 0.67
AL136084-3|CAI17044.2| 1388|Homo sapiens collagen type XV alpha ... 34 0.67
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 31 8.3
X07240-1|CAA30229.1| 170|Homo sapiens protein ( Human mRNA for ... 31 8.3
M26939-1|AAA52040.1| 176|Homo sapiens COL3A1 protein. 31 8.3
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein. 31 8.3
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 31 8.3
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 31 8.3
>L25286-1|AAA58429.1| 1388|Homo sapiens alpha-1 type XV collagen
protein.
Length = 1388
Score = 34.3 bits (75), Expect = 0.67
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -3
Query: 382 GXXGAPXXPXFXHFGR-FXPXXPGXSPPPXPXXFXXXXXLXPVPPGXGGVXG 230
G GAP P FGR P PG PP P P PPG G G
Sbjct: 1076 GPPGAPGLPGPPGFGRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPG 1127
>L25280-1|AAC78500.1| 1388|Homo sapiens type XV collagen protein.
Length = 1388
Score = 34.3 bits (75), Expect = 0.67
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -3
Query: 382 GXXGAPXXPXFXHFGR-FXPXXPGXSPPPXPXXFXXXXXLXPVPPGXGGVXG 230
G GAP P FGR P PG PP P P PPG G G
Sbjct: 1076 GPPGAPGLPGPPGFGRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPG 1127
>AL354923-1|CAI12548.2| 1388|Homo sapiens collagen type XV alpha 1
protein.
Length = 1388
Score = 34.3 bits (75), Expect = 0.67
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -3
Query: 382 GXXGAPXXPXFXHFGR-FXPXXPGXSPPPXPXXFXXXXXLXPVPPGXGGVXG 230
G GAP P FGR P PG PP P P PPG G G
Sbjct: 1076 GPPGAPGLPGPPGFGRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPG 1127
>AL136084-3|CAI17044.2| 1388|Homo sapiens collagen type XV alpha 1
protein.
Length = 1388
Score = 34.3 bits (75), Expect = 0.67
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -3
Query: 382 GXXGAPXXPXFXHFGR-FXPXXPGXSPPPXPXXFXXXXXLXPVPPGXGGVXG 230
G GAP P FGR P PG PP P P PPG G G
Sbjct: 1076 GPPGAPGLPGPPGFGRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPG 1127
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
collagen protein.
Length = 1466
Score = 30.7 bits (66), Expect = 8.3
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 596 GSPXTXGXXGKXGXPKGPKXPXXPKTPKXXGXKXSXPXXPXN 721
G P G G+ G P P P P +P G S P P N
Sbjct: 109 GDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQN 150
>X07240-1|CAA30229.1| 170|Homo sapiens protein ( Human mRNA for
prepro alpha1(III) collagen (N-term.). ).
Length = 170
Score = 30.7 bits (66), Expect = 8.3
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 596 GSPXTXGXXGKXGXPKGPKXPXXPKTPKXXGXKXSXPXXPXN 721
G P G G+ G P P P P +P G S P P N
Sbjct: 109 GDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQN 150
>M26939-1|AAA52040.1| 176|Homo sapiens COL3A1 protein.
Length = 176
Score = 30.7 bits (66), Expect = 8.3
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 596 GSPXTXGXXGKXGXPKGPKXPXXPKTPKXXGXKXSXPXXPXN 721
G P G G+ G P P P P +P G S P P N
Sbjct: 109 GDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQN 150
>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
Length = 1163
Score = 30.7 bits (66), Expect = 8.3
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 596 GSPXTXGXXGKXGXPKGPKXPXXPKTPKXXGXKXSXPXXPXN 721
G P G G+ G P P P P +P G S P P N
Sbjct: 109 GDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQN 150
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 30.7 bits (66), Expect = 8.3
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 596 GSPXTXGXXGKXGXPKGPKXPXXPKTPKXXGXKXSXPXXPXN 721
G P G G+ G P P P P +P G S P P N
Sbjct: 109 GDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQN 150
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 30.7 bits (66), Expect = 8.3
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 596 GSPXTXGXXGKXGXPKGPKXPXXPKTPKXXGXKXSXPXXPXN 721
G P G G+ G P P P P +P G S P P N
Sbjct: 109 GDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQN 150
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.313 0.145 0.486
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,831,176
Number of Sequences: 237096
Number of extensions: 831007
Number of successful extensions: 6615
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6194
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12769697060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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