Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP21_F_D10
         (963 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.6  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    30   2.8  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    28   8.6  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = -3

Query: 382 GXXGAPXXPXFXHFGRFXPXXPGXSPPPXPXXFXXXXXLXPVPP 251
           G  G P  P      RF P   G  PPP P        + P PP
Sbjct: 309 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = -3

Query: 382 GXXGAPXXPXFXHFGRFXPXXPGXSPPPXPXXFXXXXXLXPVPP 251
           G  G P  P      RF P   G  PPP P        + P PP
Sbjct: 319 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 596 GSPXTXGXXGKXGXPKGPKXPXXPKTPKXXG 688
           G+P   G  G  G P GP  P  P TP+  G
Sbjct: 46  GTPGGPGTPGGLGTPGGPGTPGGPGTPETSG 76


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 577 GXXGXXGVPXNPGXPXEXXGXXRPQXAXXPKNPXTXG 687
           G  G  G P  PG P    G   P     P  P T G
Sbjct: 113 GTPGGPGTPGGPGNPGGLGGPGNPGGPGTPGGPGTPG 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.145    0.486 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,030,905
Number of Sequences: 27780
Number of extensions: 98766
Number of successful extensions: 1319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)